Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30951X
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 124 5e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 121 5e-29
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 79 3e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 54 1e-08
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 29 0.35
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 29 0.46
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 3.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.2
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 4.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 4.3
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 4.3
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 5.6
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 7.4
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 24 9.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 24 9.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 24 9.8
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 9.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 124 bits (300), Expect = 5e-30
Identities = 53/78 (67%), Positives = 65/78 (83%)
Frame = +1
Query: 226 FQHFLQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 405
F F GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 406 TIGKEIVDLVLDRIRKLA 459
T+GKE+VD V D+IR++A
Sbjct: 109 TVGKELVDEVTDKIRRIA 126
Score = 91.9 bits (218), Expect = 4e-20
Identities = 40/63 (63%), Positives = 44/63 (69%)
Frame = +2
Query: 83 MRECISVHVGQAGVHIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGVAS 262
MRE IS+HVGQAG IGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 TYP 271
P
Sbjct: 61 YVP 63
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 121 bits (292), Expect = 5e-29
Identities = 50/78 (64%), Positives = 65/78 (83%)
Frame = +1
Query: 226 FQHFLQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 405
F F GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 406 TIGKEIVDLVLDRIRKLA 459
T+GKE++D VL+RIR++A
Sbjct: 113 TVGKEMIDSVLERIRRMA 130
Score = 85.8 bits (203), Expect = 3e-18
Identities = 44/68 (64%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Frame = +2
Query: 83 MRECISVHVGQAGVHIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 247
MRE ISVHVGQAGV IGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 248 TGVASTYP 271
TG P
Sbjct: 60 TGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 79.0 bits (186), Expect = 3e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +1
Query: 256 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 435
GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 436 LDRIRKLA 459
LD +R+ A
Sbjct: 117 LDVVRREA 124
Score = 33.1 bits (72), Expect = 0.021
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 83 MRECISVHVGQAGVHIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGVAS 262
MRE + + GQ G +G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 263 TYP 271
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 54.0 bits (124), Expect = 1e-08
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +1
Query: 235 FLQRDRSGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 408
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 409 IGKEIVDLVLDRIRKLA 459
+ I + ++D I + A
Sbjct: 110 HAERIFEDIMDMIDREA 126
Score = 46.8 bits (106), Expect = 2e-06
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +2
Query: 86 RECISVHVGQAGVHIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 250
RE I++ GQ G IG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 29.1 bits (62), Expect = 0.35
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 351 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLATPVSLKKVLKESSPPPMVLSVGIW 184
F + + S +++N+ + KID GY T S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 28.7 bits (61), Expect = 0.46
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 318 ADLINNSRFKIDEDSTGYVLATPVSLKKVLKESSPPPM 205
AD+IN SR+ ID S +T + L P P+
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQPI 492
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 123 STSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARP 251
S+S+ + T+ ST SSL + ++PS T ST SSA P
Sbjct: 161 SSSLSSSDPLTS-STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
Score = 25.0 bits (52), Expect = 5.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 90 SASLYTLAKPE-STSVMPAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSA 245
S+S TL STS +P+ S ++ ST+SSL + + S + S +SS+
Sbjct: 224 SSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 123 STSVMPAGSFTAWSTASSLMARCPQTRPS 209
STS+ P+ +F++ ST ++ P +RPS
Sbjct: 188 STSIDPSVAFSSKSTLATTRTNAPLSRPS 216
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 181 WPDAHRQDHRGWRRFFQHFLQR 246
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 136 ITDVDSGLANVYRDALTHFDLSF 68
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 184 PDAHRQDHRGWRRFFQHFLQRDRSGKHVPRAVFVDLEPTV 303
P+ H + G F + F +DR G V VFV+ P +
Sbjct: 22 PEYHNERSLGDSHFLRTFRMQDRKGYDVLIKVFVNKLPEI 61
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 285 DEDSTGYVLATPVSLKKVLKESSPPPMVLSVGIWPSG 175
++D T Y L P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKY-LGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 190 HLAIRLDAVLQAV-KLPAGITDVDSGLANVYRDALTHFDLSF 68
H I+ D L + K + +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 367 KEDAANNYARGHYTIGKEIVDLV 435
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/41 (26%), Positives = 15/41 (36%)
Frame = -1
Query: 239 RKC*KNRLHPRWSCLWASGHQAGCRAPGSKAPSRHYRCGLR 117
R C H W+ Q G+ P R +CG+R
Sbjct: 57 RLCSNIESHDETDTEWSKNTQWSMYLEGNSEPKREDKCGIR 97
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 202 DHRGWRRFFQHFLQRDRSG 258
D R +++FFQ F+Q +SG
Sbjct: 958 DSRSFKQFFQKFIQALKSG 976
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 187 LAIRLDAVLQAVKLPAGITDVDSGL 113
+ +R D+V+Q + AG+TDV S L
Sbjct: 338 ITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 315 DLINNSRFKIDEDSTGYVLATPVSLKKVLKESSPPPMVLSV 193
D I+ S+ K ++ Y+ P KKV++ S+P +VL +
Sbjct: 120 DTISFSKPKTVDNYPEYIQHLPGFTKKVVQNSNPEILVLCI 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,101
Number of Sequences: 5004
Number of extensions: 39657
Number of successful extensions: 133
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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