Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30950
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   1.8  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   2.4  
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    25   3.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    24   4.3  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    24   5.6  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    23   7.5  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    23   9.9  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 109 RLPEDYNPDDFSAF 150
           RL   YNPDD++AF
Sbjct: 59  RLDASYNPDDYNAF 72


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 67  KDSAKLYSKVIASRRLPEDYNPDDFSAFNSAGSH 168
           KD    + K I + +   D N  D+S F +AG H
Sbjct: 61  KDKNNDFWKAIKNAKNASDINFSDYSIFFAAGGH 94


>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  LYSKVIASRRLPEDYNPDDFSAFNSAGSH 168
           ++ +++ + +  ++ NPD +  F  AG H
Sbjct: 104 MFWRIVQNSKTADEVNPDKYDIFFVAGGH 132


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   MCPASVCIWSISKVPTKR 58
           +C +S+ +W  +K PTKR
Sbjct: 558 ICESSLILWMTAKDPTKR 575


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 97  SPWSTAWPNPLPFSFCWDFRNRPDTDRS 14
           SPW T  P    F+F W   +    D+S
Sbjct: 263 SPWHTISPYVAAFAFLWTALHATKEDQS 290


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 87  VQLGRIL-CRSRFVGTFEIDQIQTEAGHI 4
           ++  R+L    RF+ + E+ +  TE GH+
Sbjct: 553 IECNRVLDVNDRFLRSIEVGKASTEKGHV 581


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 223 TDSKQITNLNKIKR 264
           T +K ITN+NK+KR
Sbjct: 391 TPTKIITNINKLKR 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,004,519
Number of Sequences: 5004
Number of extensions: 14576
Number of successful extensions: 39
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)