Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30950
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   41   2e-04
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   9e-04
SB_52489| Best HMM Match : DUF1418 (HMM E-Value=3.9)                   28   1.3  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   1.3  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)          27   2.9  
SB_13924| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061)                26   6.7  
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)               26   6.7  
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   6.7  
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  

>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = +1

Query: 1   GYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASR 108
           GY  RFG++ VDF+ P+K RT K SA ++ +++A++
Sbjct: 294 GYKFRFGVHHVDFDDPHKHRTPKKSALVFKEIVANK 329


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 1   GYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLP 117
           GY   FG++ V+F  PN+ R  K SA  Y K++A    P
Sbjct: 466 GYNMPFGIHFVNFTDPNRPRLPKKSAIFYKKIVAQNGFP 504


>SB_52489| Best HMM Match : DUF1418 (HMM E-Value=3.9)
          Length = 197

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 82  LYSKVIASRRLPEDYNPDDFSAFNSAGSHFCSIFMLFPLTI 204
           LY+ VIAS  L E ++PD F+A   A +     +  F +T+
Sbjct: 15  LYAFVIASLSLTEPWSPDGFNASFPACAKMDKYYYAFAITM 55


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 82  LYSKVIASRRLPEDYNPDDFSAFNSAGSHFCSIFMLFPLTI 204
           LY+ VIAS  L E ++PD F+A   A +     +  F +T+
Sbjct: 146 LYAFVIASLSLTEPWSPDGFNASFPACAKMDKYYYAFAITM 186


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 64  AKDSAKLYSKVIASRRLPEDYNPDDF 141
           A D+  L++K +  +RL  DYNP+DF
Sbjct: 355 ANDTKGLFTKFL--KRLETDYNPEDF 378


>SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)
          Length = 704

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 93  LGVQLGRILCRSRFVGTFEIDQIQTEAGH 7
           +G+ +G +L  S  V T+EID I  +A H
Sbjct: 288 IGIIVGLVLLISFLVKTYEIDNIPYDASH 316


>SB_13924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 98  ITLEYSLAESFAVLVLLGLSKSTRYRP 18
           +++ Y+LA S A+ V LGL+ +TR  P
Sbjct: 116 LSIAYALATSGAITVALGLNYATRGAP 142


>SB_37300| Best HMM Match : MMR_HSR1 (HMM E-Value=0.061)
          Length = 152

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 117 GQASTRNHLGVQLGRILCRSRFVGT 43
           G  + R HL  QLG + C    +GT
Sbjct: 108 GTLTVREHLKFQLGLVKCADSLIGT 132


>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
          Length = 711

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 75  RILCRSRFVGTFEIDQI 25
           R LC +RF G ++ID+I
Sbjct: 323 RSLCHARFCGNYDIDEI 339


>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 175  SIFMLFPLTIHWLFR*TDSKQITNLNKIK 261
            +IF+L+PL + W  R  D++ +  L  IK
Sbjct: 1083 TIFLLYPLLLAWARR-ADNRDLVQLGPIK 1110


>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -1

Query: 79  WPNPLPFSFCW-DFRNRP 29
           WP  L  SFCW +F  RP
Sbjct: 56  WPQLLSSSFCWRNFSQRP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,254,604
Number of Sequences: 59808
Number of extensions: 105979
Number of successful extensions: 253
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)