Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30950
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    41   2e-04
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    40   5e-04
U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical pr...    29   0.49 
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AL117207-4|CAB60392.1|  311|Caenorhabditis elegans Hypothetical ...    26   6.0  
AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical ...    25   7.9  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   GYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVI 99
           G+  +FGL  VDFESP+KTRT K SA  Y + I
Sbjct: 434 GFELKFGLCEVDFESPDKTRTMKKSAYFYKEFI 466


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +1

Query: 1   GYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVI 99
           G+  +FG+  VDF+SP+KTRT K SAK Y   I
Sbjct: 437 GFGVKFGICRVDFDSPDKTRTMKYSAKYYQTFI 469


>U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical
           protein T03G6.3 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 EDYNPDDFSAFNSAGSHFCSIFML 189
           E+  P D SAF S+G+  CSIF+L
Sbjct: 437 ENRGPVDSSAFRSSGTLLCSIFVL 460


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 28  LVDFESPNKTRTAKDSAKLYSKVIASRRLPEDYNPDDFS 144
           LVD+  PNK   AK  AK+  +    + L +   P D S
Sbjct: 183 LVDYNYPNKNVDAKHVAKISKQCQIVKNLTDHCTPFDSS 221


>AL117207-4|CAB60392.1|  311|Caenorhabditis elegans Hypothetical
           protein Y60A3A.5 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 16  FGLYLVDFESPNKTRTAKDSAKLYSKVIAS 105
           FG YL+  ++PNK +  K S  L   V AS
Sbjct: 32  FGAYLIVVKTPNKMKMVKASMLLLQLVGAS 61


>AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.6 protein.
          Length = 446

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 FSAFNSAGSHFCSIFMLFPLTIHWLF 216
           FS F+   + FC  F +FP ++  +F
Sbjct: 18  FSVFSPISAFFCFCFSIFPFSVPDIF 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,435,385
Number of Sequences: 27780
Number of extensions: 81116
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)