Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30948X
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    49   2e-07
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   1.4  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   1.8  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   2.4  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    25   3.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   4.2  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   4.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    24   5.5  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    24   7.3  
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    24   7.3  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    24   7.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   7.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    23   9.6  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        23   9.6  

>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = +2

Query: 38  EPWYWWSKFHERLDWDKRVGVVLELS-ADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKG 214
           E W  W        +  R+ V LEL  A  P  E+V RW  EP++ I +    F  N  G
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPIELVNRWYAEPIEMITMSCMAFVPNPNG 233

Query: 215 YPVLSRAHQQLVVTW*NMKHRL*LVVLEDPTL---NSSYSIY 331
           YPVL R  + +   +  +  R+ L   + P     +  YSIY
Sbjct: 234 YPVLGRKLRAIYALYLRLNPRILLWDNDAPEKIGDSPDYSIY 275


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 189 DVGTIIAFTGSPSHLFTTSCDGRSADNSKTTPTRLSQSRRSWNLDHQYQ 43
           D+  I       + LF + C G + D+S  + T+LSQS  + +L H Y+
Sbjct: 268 DIELITCKFSKLNSLFLSKCIGLT-DSSLLSLTKLSQSLTTLHLGHCYE 315


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 274 QVIVSGARRSNIEFFVQYL 330
           +VI+S  + SNIE F++YL
Sbjct: 395 EVIISNLKASNIEAFLEYL 413


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 LGEPVKAIIVPTSIFHNNKKGYP 220
           LG P K+  VPTS+  N  + +P
Sbjct: 318 LGRPTKSPSVPTSVGSNKSRKFP 340


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  EKAWNEP-WYWWSKFHERLDWDKRVGVVLELSAD 121
           E++ N+P  +W +   + + WDK+   V++ S D
Sbjct: 40  EESINDPSTFWGNMARDMMTWDKQFSTVVQGSID 73


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 2   CTEDDEEEKAWNEPWYWWSK 61
           C  DD+ +  WN   +W SK
Sbjct: 543 CVYDDKMDSLWNSRSFWVSK 562


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 134 EVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSRAHQQLVVTW 259
           ++V  W   P   +I+   +   NKK   +L +  +Q   TW
Sbjct: 477 QIVIAWSVSPFVLLIIRWILVRRNKKRLALLEQNKEQYEKTW 518


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
          Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 27 KLGMSPGTGGPNS 65
          +LG+S G+GGPNS
Sbjct: 11 ELGLSLGSGGPNS 23


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +3

Query: 75  LIGINVLVLFWSCLQIFHH 131
           LI +++++L W C+ +++H
Sbjct: 19  LITLSIILLGWQCVLLYNH 37


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 321 YEEFNVGSSSTTNYNL 274
           YE+ +VG S+T NY L
Sbjct: 59  YEDVSVGRSNTCNYQL 74


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 108 SKTTPTRLSQSRRSWNLDHQY 46
           S    TRL + R+ W  DH +
Sbjct: 2   SSLCKTRLQEERKQWRRDHPF 22


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 134 EVVKRWLGEPVKAIIVPTSIFHNNKKGY 217
           E ++ WL + +  ++ P+  F+ + KGY
Sbjct: 347 EFLRTWLLKALSHLVAPSFYFNPSTKGY 374


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 47  YWWSKFHE 70
           YWWSK HE
Sbjct: 857 YWWSKDHE 864


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 175 NRFYWFTKPSLYYFL*WKICRQLQNNTNTFIPI 77
           N+F  F    L+     ++CRQL+  T   +P+
Sbjct: 18  NKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPV 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,093
Number of Sequences: 5004
Number of extensions: 32183
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)