Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30948X
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 36 0.011
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 29 0.70
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 29 0.70
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338... 28 2.1
11_06_0647 + 25870470-25870744,25870765-25871533 27 2.8
03_06_0049 + 31282563-31282841,31283052-31283903,31284109-312841... 26 6.6
11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243... 26 8.7
08_01_0452 - 3999072-3999344 26 8.7
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 26 8.7
04_04_0387 + 24869594-24871480 26 8.7
04_03_0852 + 20289439-20289721,20289858-20290642 26 8.7
04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789 26 8.7
04_01_0445 + 5812277-5813893 26 8.7
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 110 LSADLPSQEVVKRWLGEPVKAIIVPTSIFHNNKKGYPVLSRAHQQLVVTW*N 265
+ + LPS + RW GEP F N +GYP LS+ HQ+L+ + N
Sbjct: 179 IRSTLPSMNSLGRWFGEPA---------FLTNARGYPCLSKRHQKLLTGFFN 221
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 32 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 127
W +PWYWWS L W K+ L +A++P
Sbjct: 285 WFKPWYWWSWPILPLGLSWHKQRWDDLGYAAEMP 318
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 29.5 bits (63), Expect = 0.70
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 32 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 127
W +PWYWWS L W ++ L S++LP
Sbjct: 244 WFKPWYWWSWPVLPLGLSWHEQRRENLGYSSELP 277
>01_01_0456 -
3385907-3386174,3386283-3386470,3386542-3387027,
3387123-3387184,3387269-3387429,3388215-3388290,
3388382-3388471,3388591-3388659,3389498-3389756
Length = 552
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 201 ITKKDILFCLGLTNNL*LHGRT*STGYS*WCSKIQH 308
+T ++L+C GL NL G+ GYS C+++ H
Sbjct: 452 VTLFNVLYCKGLRQNLISEGQLDRDGYS--CTRLAH 485
>11_06_0647 + 25870470-25870744,25870765-25871533
Length = 347
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 5 TEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRW 151
T+DD+EE E ++HE WD+R L +S LP E + W
Sbjct: 242 TQDDKEESERQEEEKTTEEWHEWYKWDERSDRSL-VSIALPLIEAGEVW 289
>03_06_0049 +
31282563-31282841,31283052-31283903,31284109-31284194,
31284544-31284678,31285087-31285252
Length = 505
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 119 LQTTPKQHQHVYPNQGAHGIWTT 51
LQ P+ HVYPN GI T
Sbjct: 115 LQKHPRPSHHVYPNPSGSGIVVT 137
>11_06_0760 +
27017956-27018433,27018487-27019234,27023760-27024378,
27030755-27032440
Length = 1176
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 156 PSHLFTTSCDGRSADNSKTTPTRLSQSRRSWNLDHQY 46
P L S ++DNSK +L++ R+ LD QY
Sbjct: 269 PKALRRRSSSNSNSDNSKIREGKLTRLPRALTLDRQY 305
>08_01_0452 - 3999072-3999344
Length = 90
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 173 SLLLVHQAISLLLPVMEDLQTTPKQHQHVYPNQGAHGIWTTSTRAHSKL 27
+LL + Q + L P +E L K Q PN G + IW T S L
Sbjct: 13 ALLALPQDPACLAPTLEQLLDITKSIQ---PNVGGNWIWCPPTSGRSDL 58
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 205 QKRISCFVSGSPTTCSYMVEHEAQVIVSGARRSNIE 312
Q+ CF+ GSP + S+ V+ + +SG+R S+ +
Sbjct: 299 QQNTPCFL-GSPHSASFAVDCGSTRFISGSRNSSYQ 333
>04_04_0387 + 24869594-24871480
Length = 628
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 11 DDEEEKAWNEPWYWWSKFHERLD 79
DDE EK W+E W K ++++
Sbjct: 498 DDESEKYWDEQWKQAMKSSDKME 520
>04_03_0852 + 20289439-20289721,20289858-20290642
Length = 355
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = -3
Query: 294 STTNYNLCFMFYHVTTSCW*ARDKTGYPFLLL*NIDVGTIIAFTGSP-----SHLFTTSC 130
S + N+ F FY ++ +T P + +DVG I GS S +F T C
Sbjct: 256 SLAHLNVAFKFYSISADVHGVLGQTYRPDYVSAGVDVGAKIPVMGSAGKYAVSDIFATDC 315
Query: 129 D 127
+
Sbjct: 316 E 316
>04_03_0045 + 10107994-10108076,10108289-10108529,10108571-10108789
Length = 180
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 223 FVSGSPTTCSYMVEHEAQVIVSGARRSNIE 312
F + P TC + HE Q VS RR +E
Sbjct: 146 FGTNCPKTCENVKAHEQQQRVSSTRRPRME 175
>04_01_0445 + 5812277-5813893
Length = 538
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 21 KRKLGMSPGTGGPNSMSALIGINVLVLFWSCL 116
K G PG G NS+ L G NV+ F++ L
Sbjct: 468 KTDAGYPPGIGVRNSLFFLAGCNVIGFFFTFL 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,769,618
Number of Sequences: 37544
Number of extensions: 196616
Number of successful extensions: 578
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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