Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30948X
(338 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59) 29 1.3
SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9) 28 2.2
SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073) 28 2.2
SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0) 27 3.9
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 26 6.8
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_36914| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31) 26 9.0
SB_47935| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_576| Best HMM Match : RVT_1 (HMM E-Value=0) 26 9.0
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 26 9.0
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 26 9.0
>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
Length = 437
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 5 TEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLEL 112
T D+E++ + WWSKF+ + ++ G L+L
Sbjct: 116 TRRDKEKETMEQYVDWWSKFYASIGQAEKAGAYLDL 151
>SB_9973| Best HMM Match : Gp5_C (HMM E-Value=9.9)
Length = 104
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 15 MKKRKLGMSPGTGGPNSMSALIGINVLVLFWSCLQIFHHR 134
+ +K+ + P + S + +I L SC+Q+ HHR
Sbjct: 52 LSAQKVALKPASNSIPSNTIIINFVFAALHRSCMQLIHHR 91
>SB_31924| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00073)
Length = 498
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 32 WNEPWYWWSKFHERLDWDKRV 94
WN+PWY W K + D DK V
Sbjct: 26 WNKPWYQWDK--KENDADKTV 44
>SB_28046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +1
Query: 88 TCWCCFGVVCRSSITGSS-KEMAW*TSKSDYRTNINIS**QKRISCFVSGS--PTTCSYM 258
TC CCF C +TG +E W + + F G C ++
Sbjct: 297 TCKCCFSSECVGIVTGEPWRECGWCNRLFAGDACYERQTEEGAETVFKGGDCVDRFCQWL 356
Query: 259 VEHEAQVIVSGARRSNIEFFV-QYLHR 336
++HE ++++ R FF+ +Y ++
Sbjct: 357 LDHENSIVIAHNLRGYDGFFICEYFYK 383
>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
Length = 483
Score = 27.1 bits (57), Expect = 3.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 23 EKAWNEPWYWWSKFHE 70
E W+E + W+SK+HE
Sbjct: 338 EMGWSERYEWYSKYHE 353
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 50 WWSKFHERLDWDK--RVGVVLELSADLPSQEVVKRWLGEPVKA---IIVPTS 190
W + +H +L D R + ++ + VV RWL PV+A + PTS
Sbjct: 713 WATFYHVKLKCDNSSRSITLSGFQGNMDANTVVTRWLSSPVEARYVTVTPTS 764
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 26.2 bits (55), Expect = 6.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 332 CRYCTKNSMLDLRAPLTITCASCS 261
C+ C K + +DL + TC CS
Sbjct: 602 CKPCPKGTYMDLEGHVVETCKKCS 625
>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -1
Query: 128 MEDLQTTPKQHQHVYPNQGAHGIWTTSTRAHSKLSLLHHLQC 3
M+++ T + YP GIW T+ + L+HH C
Sbjct: 179 MKEISTFTRNTIEKYPVCDKEGIWQTTLQKIVSTYLVHHGYC 220
>SB_36914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 218 PVLSRAHQQLVVTW*NMKHRL*LVVLEDPTLNSS 319
P S H+ L+VT +++HRL L + + + NSS
Sbjct: 40 PTGSEGHEYLLVTRGDLRHRLFLNSMTESSSNSS 73
>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 203 NKKGYPVLSRAHQQLVVTW*NMKHRL*LVVLEDPTLNSSY 322
++KGYP+ R H+++ V K + +V+L D L+S Y
Sbjct: 56 DEKGYPLSLRKHKEVHVPVVYPKCKELVVILYDQPLSSCY 95
>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
Length = 1283
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 44 WYWWSKFHERLDWDKRVGVVLELSADLP--SQEVVKRWLGEPVKAI 175
+ WW K ++++ + V + +A P S+ WLG P K +
Sbjct: 905 YLWWPKLDQQIEETVKACVACQEAAKAPPSSKPAAWSWLGGPWKRL 950
>SB_47935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 17 EEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAII 178
E E+ W + W +E DW + + ++ PS E + E VK I+
Sbjct: 149 EAERFWRDLWENQGTGNEDADWLEEIEEAIDQCVPPPSSEDWELTTKEAVKVIL 202
>SB_576| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1444
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 197 EILMLVR*SLLLV--HQAISLLLPVMEDLQTTPKQHQHVYPNQGAHGIWTTSTRAH 36
E + VR LL V H+A + V + TT H+ QG H +TT+ H
Sbjct: 1178 EAITAVRLMLLAVFAHKAYTTTQGVHKAYTTTQGVHKAYTTTQGVHKAYTTTQGVH 1233
Score = 25.8 bits (54), Expect = 9.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 161 VHQAISLLLPVMEDLQTTPKQHQHVYPNQGAHGIWTTSTRAH 36
VH+A + V + TT H+ QG H +TT+ H
Sbjct: 1252 VHKAYTTTQGVHKAYTTTQGVHKGYTTTQGVHKAYTTTQEVH 1293
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 222 TGYPFLLL*NIDVGTIIAFTGSPSHLFTTSCDGRSADNSKTTPTRLSQS 76
TG+PF ++ G + T HL T DG+S + ++ RL ++
Sbjct: 626 TGFPFPDYFSVPPGFLTHHTSDIGHLETAGSDGKSLHSPFSSLFRLPET 674
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 25.8 bits (54), Expect = 9.0
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = +2
Query: 8 EDDEEEKAWNEPWYWWSKFHER 73
+DD+++ ++ W+WW + +R
Sbjct: 582 DDDDDDDDDDDDWWWWRRQEKR 603
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,559,094
Number of Sequences: 59808
Number of extensions: 239854
Number of successful extensions: 599
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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