Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30948X
(338 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31120.2 68417.m04418 Skb1 methyltransferase family protein c... 72 1e-13
At4g31120.1 68417.m04417 Skb1 methyltransferase family protein c... 72 1e-13
At2g35710.2 68415.m04379 glycogenin glucosyltransferase (glycoge... 29 0.60
At2g35710.1 68415.m04380 glycogenin glucosyltransferase (glycoge... 29 0.60
At4g13110.1 68417.m02043 BSD domain-containing protein contains ... 27 2.4
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 27 2.4
At1g34050.1 68414.m04221 ankyrin repeat family protein contains ... 27 2.4
At5g58340.1 68418.m07305 expressed protein ; expression supporte... 27 4.2
At5g38570.1 68418.m04664 F-box family protein contains F-box dom... 27 4.2
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit... 27 4.2
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F... 26 5.6
At5g53620.2 68418.m06662 expressed protein 26 7.4
At5g53620.1 68418.m06661 expressed protein 26 7.4
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 25 9.7
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family... 25 9.7
At3g47960.1 68416.m05229 proton-dependent oligopeptide transport... 25 9.7
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9... 25 9.7
>At4g31120.2 68417.m04418 Skb1 methyltransferase family protein
contains Pfam profile: PF05185 Skb1 methyltransferase
Length = 584
Score = 71.7 bits (168), Expect = 1e-13
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +2
Query: 14 DEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSI 193
D+ + N+ W W+ F + D ++ V L++ + LPS+ + RW+GE V+A I+ T
Sbjct: 169 DDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDA 228
Query: 194 FHNNKKGYPVLSRAHQQLVVTW*NMKHRL*LVVLEDPTLN 313
F N +GYP LS+ HQ+L+ + H +V+ P N
Sbjct: 229 FLTNARGYPCLSKRHQKLIAGF--FDHAAQVVICGKPVHN 266
>At4g31120.1 68417.m04417 Skb1 methyltransferase family protein
contains Pfam profile: PF05185 Skb1 methyltransferase
Length = 642
Score = 71.7 bits (168), Expect = 1e-13
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +2
Query: 14 DEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAIIVPTSI 193
D+ + N+ W W+ F + D ++ V L++ + LPS+ + RW+GE V+A I+ T
Sbjct: 169 DDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDA 228
Query: 194 FHNNKKGYPVLSRAHQQLVVTW*NMKHRL*LVVLEDPTLN 313
F N +GYP LS+ HQ+L+ + H +V+ P N
Sbjct: 229 FLTNARGYPCLSKRHQKLIAGF--FDHAAQVVICGKPVHN 266
>At2g35710.2 68415.m04379 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2 from
Homo sapiens [SP|O15488]
Length = 389
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 32 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 127
W +PWYWWS W ++ + SA++P
Sbjct: 183 WLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMP 216
>At2g35710.1 68415.m04380 glycogenin glucosyltransferase
(glycogenin)-related low similarity to glycogenin-2 from
Homo sapiens [SP|O15488]
Length = 497
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 32 WNEPWYWWS--KFHERLDWDKRVGVVLELSADLP 127
W +PWYWWS W ++ + SA++P
Sbjct: 291 WLKPWYWWSWPVLPLGFSWHEQRRATIGYSAEMP 324
>At4g13110.1 68417.m02043 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 316
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 68 ERLDWDKRVGVVLELSADL 124
ERLDW +R GV +E DL
Sbjct: 284 ERLDWRRRAGVAVEEEEDL 302
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5)
identical to HAC5 (GI:21105780) [Arabidopsis thaliana];
similar to CREB-binding protein GB:S39162 from [Homo
sapiens]
Length = 1670
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 168 FTGSPSHLFTTSCD-GRSADNSKTTPTRLSQSRRSWNLDHQYQGSFQA 28
++G L T D G + K PT S +NLDHQ G F++
Sbjct: 212 YSGDGGKLLATGSDFGNPSQLQKQRPTG-SNDLMGYNLDHQLGGGFRS 258
>At1g34050.1 68414.m04221 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 573
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 56 SKFHERLDWDKRVGVVLELSADLPSQEVVK 145
S ER WD G VL L+ +L +E+V+
Sbjct: 42 SVLRERYHWDSLGGTVLHLATELGHKEIVE 71
>At5g58340.1 68418.m07305 expressed protein ; expression supported
by MPSS
Length = 466
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 68 ERLDWDKRVGVVLELSADLPSQEVVKRWLGEPVKAI 175
ER+ W KR+G++ E +DL + +++K W + KA+
Sbjct: 116 ERI-WTKRIGILKESGSDLVTCDLLK-WESDLKKAL 149
>At5g38570.1 68418.m04664 F-box family protein contains F-box domain
Pfam:PF00646
Length = 379
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +2
Query: 26 KAWNEPWYWWSKFHERLDWDKRVGVVLELSADLP 127
K W W W WD R G+V ++ LP
Sbjct: 32 KRWEFLWMWLPNLEFVSPWDSRPGIVDFINKKLP 65
>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
Length = 183
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 5 TEDDEEEKAWNEPWYWWSKFHERLDWDKRVGVVL 106
+E+DE+E+A W +KF E+LD + ++L
Sbjct: 92 SEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIIL 125
>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
F-box domain PF:00646
Length = 375
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 169 FYWFTKPSLYYFL 131
FYW+ +P L YFL
Sbjct: 296 FYWYNRPDLTYFL 308
>At5g53620.2 68418.m06662 expressed protein
Length = 682
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -1
Query: 197 EILMLVR*SLLLVHQAISLLLP----VMEDLQTTPKQHQHVYPNQGAHGI 60
EI LV+ + H S+LL + D P Q+ HV+P+QG HG+
Sbjct: 392 EISQLVQPQVPSQHIEQSVLLQQKAQAVPDSSQMPMQN-HVHPSQGVHGL 440
>At5g53620.1 68418.m06661 expressed protein
Length = 682
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -1
Query: 197 EILMLVR*SLLLVHQAISLLLP----VMEDLQTTPKQHQHVYPNQGAHGI 60
EI LV+ + H S+LL + D P Q+ HV+P+QG HG+
Sbjct: 392 EISQLVQPQVPSQHIEQSVLLQQKAQAVPDSSQMPMQN-HVHPSQGVHGL 440
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 23 EKAWNEPWYWWSKFHERLDWDKRVGVVLEL 112
EK+W WW K E L + G+V+E+
Sbjct: 1647 EKSWES---WWEKDIEHLQHSGKWGIVVEI 1673
>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
protein
Length = 426
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 143 LLLPVMEDLQTT-PKQHQHVYPNQGAH 66
++LP +E + + HQH+ P+QG H
Sbjct: 365 VVLPPLESIAAPRAEDHQHMRPSQGLH 391
>At3g47960.1 68416.m05229 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 606
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 15 MKKRKLGMSPGTGGPNSMSALIGINVLVL 101
+ K LGM+P TG +SMSAL I L L
Sbjct: 450 LTKPTLGMAPRTGEISSMSALWLIPQLTL 478
>At1g10410.1 68414.m01173 expressed protein similar to ESTs
gb|N96021 and gb|N96863
Length = 485
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 11 DDEEEKAWNEPWYWWSKFHERLDWDKRVGVVLELSADLPSQEVVKRWLGEPV 166
DDE EK P + F ERL RV V +L P +++++ + +PV
Sbjct: 350 DDEVEKVKGFPLDTTAPFRERLKILGRVANVDDLHLSGPEKKLMQAYNEKPV 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,012,048
Number of Sequences: 28952
Number of extensions: 165810
Number of successful extensions: 510
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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