Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30947X
         (298 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    26   0.098
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   2.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   2.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   3.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   4.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   4.9  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 0.098
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 156 RFLKFVLQQSGXNQVQWTPVYTQHSMTTLAIR 61
           R++K VL +SG +   +T   T+H+ T+ A R
Sbjct: 268 RWIKMVLAESGVDTSIYTAHSTRHAATSAAAR 299


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
 Frame = +2

Query: 11  PSRP-SKYSDVRKPPPQLRI 67
           P  P SK S    PPPQL +
Sbjct: 218 PDSPNSKKSATPSPPPQLEV 237


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 8   SPSRPSKYSDVRKPPP 55
           SP  P +  DV+ PPP
Sbjct: 723 SPLTPHEAFDVKLPPP 738


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 8   SPSRPSKYSDVRKPPP 55
           SP  P +  DV+ PPP
Sbjct: 615 SPLTPHEAFDVKLPPP 630


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 62  RIASVVMECCV*TGVHWT 115
           R+  V M+C      HWT
Sbjct: 179 RLLGVAMDCLKGNAKHWT 196


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +2

Query: 101 GVHWTWLXPDCC 136
           G+ W ++  DCC
Sbjct: 547 GIAWLYVDNDCC 558


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 8   SPSRPSKYSDVRKPPPQLRIASV 76
           SP+R     + + P PQ R  SV
Sbjct: 684 SPTRDKSKQNEKSPSPQQRSPSV 706


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 279 RRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFLK 145
           +RR+E  K L D +      T      +VD   F    +K RF+K
Sbjct: 545 KRRTEIYKGLIDRIKSREKLTMKFHDGEVDASYFCKLPEKFRFVK 589


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 96   YTQHSMTTLAIRNCGGGFLTSE 31
            YTQ+S+   A    G G L+ +
Sbjct: 1069 YTQYSVVVQAFNKVGAGPLSDD 1090


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,964
Number of Sequences: 336
Number of extensions: 1490
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)