Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30947X
(298 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 110 5e-26
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 110 5e-26
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 32 0.021
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 1.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 2.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 3.1
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 24 4.2
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 5.5
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 24 5.5
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 23 7.3
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 23 7.3
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 23 7.3
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 23 9.6
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe... 23 9.6
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 110 bits (264), Expect = 5e-26
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 13 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 192
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 193 DIRVPVKGGGHVAQVYAIRQAFRR 264
DIRV V GGGHV+Q+YAIRQA +
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 110 bits (264), Expect = 5e-26
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 13 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 192
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 193 DIRVPVKGGGHVAQVYAIRQAFRR 264
DIRV V GGGHV+Q+YAIRQA +
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 31.9 bits (69), Expect = 0.021
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +1
Query: 34 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVDIRVPVK 213
G++K++ A G G VNG P D+ R++ K L + + ++ V
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 214 GGGHVAQVYAIRQAFRR 264
GGG Q A+ A +
Sbjct: 71 GGGPTGQSGAVHAAISK 87
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 1.8
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -2
Query: 135 QQSGXNQVQWTPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 4
Q +G Q+ W V T L + N ++YLD +D T
Sbjct: 29 QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 100 RLHAAFHDHACNTQLRWRFS 41
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 3.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 139 TAAVWXQPSPMDARLHAAFHDHACNTQLR 53
T +V + P AR AA H +A +TQLR
Sbjct: 375 TPSVKPEMFPKTARPFAAIHANASSTQLR 403
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/62 (22%), Positives = 25/62 (40%)
Frame = -2
Query: 291 NISGRRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFLKFVLQQSGXNQV 112
N SG+ S + ++ S L W V + AE ++ V ++SG + +
Sbjct: 388 NHSGKLLSAILEVMNPSTTALKCAMRLHWSIGVTLERLYQAEMDGYIVRDVYEESGSSLL 447
Query: 111 QW 106
W
Sbjct: 448 YW 449
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 23.8 bits (49), Expect = 5.5
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 37 RKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGK-EKFSMV-DIRVPV 210
RK++ K +R + RP ++ R L + +++P L KF V +I++P
Sbjct: 84 RKRSEVDTDQNKAVKKTIRQDNRPRLII--RNLPWSIKKPQHLEPHFSKFGKVREIKIPT 141
Query: 211 KGGGHV 228
KGGG +
Sbjct: 142 KGGGRM 147
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 112 DLVXPRLLQYKLQEPILLLGKE 177
DLV P ++ + L +LLLGK+
Sbjct: 53 DLVMPEIISHTLVTLLLLLGKK 74
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 236 FTLSDKHFEGSDRLLPDIFT 295
F LSD+ EG+D+L D FT
Sbjct: 52 FGLSDQIKEGADKLADDGFT 71
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 153 TYPFARQGKILYGRHQSASQGWWSCSTSLRYQ 248
T F+R GKI++ +S G W TS + Q
Sbjct: 984 TISFSRSGKIIFKSTRSKLHGIWH-ETSYKMQ 1014
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 230 HKFTLSDKHFEGSDR 274
HK L+DKHF G +R
Sbjct: 201 HKKYLTDKHFVGQNR 215
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 177 KILYGRHQSASQGWWSCSTSLRYQTSI 257
++LY ++AS +C +LRY +I
Sbjct: 103 RLLYRSQENASTNIPTCQVTLRYDANI 129
>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 177 KILYGRHQSASQGWWSCSTSLRY 245
K+L + A + WW STS+ Y
Sbjct: 243 KLLLFWQKPARKCWWDSSTSITY 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,414
Number of Sequences: 5004
Number of extensions: 24098
Number of successful extensions: 74
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -