Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30947X
(298 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-11
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27) 32 0.095
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 27 2.1
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 27 2.7
SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 27 3.6
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 27 3.6
SB_714| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0) 26 4.7
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14) 25 8.3
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 25 8.3
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 25 8.3
SB_54817| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015) 25 8.3
SB_3177| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 63.7 bits (148), Expect(2) = 2e-11
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = +1
Query: 142 KLQEPILLLGKEKFSMVDIRVPVKGGGHVAQVYAIRQAFRR 264
K++EPILLLGKE+F VDIRV VKGGGH +++YAIRQA +
Sbjct: 11 KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51
Score = 20.6 bits (41), Expect(2) = 2e-11
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 16 QAVQVFGRK 42
Q+VQVFGRK
Sbjct: 3 QSVQVFGRK 11
>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
Length = 513
Score = 31.9 bits (69), Expect = 0.095
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 198 QSASQGWWSCSTSLRYQTSISKA 266
+SA+ WSCSTS+R +TSI KA
Sbjct: 148 RSAALALWSCSTSMRNRTSIFKA 170
>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 186 REFFLAEQKDRFLKFVLQQSGXNQ--VQWTP 100
R F + KDR+LK L++ G Q QW P
Sbjct: 12 RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 160 LLLGKEKFSMVDIRVPVKGGGHVAQVYAIRQ 252
L +GKEK +M P GGH+ + + + Q
Sbjct: 463 LWIGKEKNTMTPSSAPAMPGGHLVRSFKVEQ 493
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 113 TWLXPDCCSTNFRNLSFCSARKNSLWSTS 199
TW+ P C S+NF + S ++ NS+ STS
Sbjct: 716 TWICPCCGSSNFSSGSIFTSSSNSI-STS 743
>SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 171 QGKILYGRHQSASQGWWSCSTSLRYQTSISKALIAFYQIYLR 296
QG++ H+ A+Q +W +R +TS K Q+ ++
Sbjct: 138 QGQMCDACHRQAAQDFWKAVVQVRQKTSHKKTFFYLEQLIIK 179
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 131 CCSTNFRNLSFCSARKNSLWSTSECQSRVVVM*HKFTLSDKHFEGSD 271
CC+ + + + +W E VV K TLS+ E SD
Sbjct: 602 CCNERIQQFDDSGSDEEDVWEEKELTFSSVVEGRKSTLSESDSESSD 648
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 150 LKFVLQQSGXNQVQWTPVYT 91
LK SG N++ W PVYT
Sbjct: 198 LKIQAHTSGVNRLDWNPVYT 217
>SB_714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 104 VHWTWLXPDCCSTNFRNLSF 163
+H+ WL PDC S F N +F
Sbjct: 402 IHY-WLVPDCISRRFGNAAF 420
>SB_54365| Best HMM Match : PI-PLC-Y (HMM E-Value=0)
Length = 593
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 291 NISGRRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFF 175
N + R+ ++ ++ LSD V+LC T D+ D+++F+
Sbjct: 104 NKNPRKTTKLARELSDLVSLCKSVTFQDFQYSADNQKFW 142
>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
Length = 910
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 249 SDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFL 148
+D+ +LCY T D + D E F D FL
Sbjct: 750 TDTDSLCYSVKTTDIYRDFQEDEDFSEYSTDHFL 783
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 145 LQEPILLLGKEKFSMVDIRVPVKGGGHVAQVYAIRQAFRR 264
L +P+ + KF+ +++ +P+K G V + + QA R
Sbjct: 854 LDQPLRIPQPNKFACINLNIPIKQGDRV-HCFDVMQALVR 892
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 175 PCRAKG*VPEVCTAAVWXQPSPMDAR 98
PCRAKG P V T + Q P D R
Sbjct: 776 PCRAKGFPPPVITWSRSGQTIPYDRR 801
>SB_54817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 91 RVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVDIRV 204
R G L V ++L+ L P+LL ++FS+ D+RV
Sbjct: 78 RAVGIKLVGVPNKVLKSHLNSPLLLSHPKRFSVYDLRV 115
>SB_48669| Best HMM Match : DUF1298 (HMM E-Value=0.0015)
Length = 529
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 172 KEKFSMVDIRVPVKGGGHVAQVYAIRQ 252
+ KF++V +R+PV G + ++YA ++
Sbjct: 267 ENKFALVFLRLPVVAGSPLERLYAAKE 293
>SB_3177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 132 AAVQTSGTYPFARQGKILYGRHQSASQGWWSCSTS 236
A ++TS TY AR K+ +G + AS ++ CS++
Sbjct: 16 AIMRTSSTY--ARFLKVFFGPRRDASTVYYPCSSA 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,787
Number of Sequences: 59808
Number of extensions: 199816
Number of successful extensions: 449
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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