Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30947X
         (298 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   7.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          19   9.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   9.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   9.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   9.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   9.8  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -2

Query: 45  FLTSEYLDGLDGLT 4
           F++S +L+GL+GLT
Sbjct: 391 FVSSPFLNGLEGLT 404


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 141 VLQQSGXNQVQWTPVYTQHSMTTLAIRNCGGGFLT 37
           +L     N  +W  V+  HS +T+  +  G GF T
Sbjct: 197 ILDDMYNNNTEWEIVHMSHSESTIDSK-FGLGFTT 230



 Score = 19.4 bits (38), Expect = 9.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 108 WTPVYTQHSMTTLAI 64
           W P    HS+T++ I
Sbjct: 116 WVPDIVMHSVTSVGI 130


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 117  QVQWTPVYTQHSMTTLAIRNCGGGFLTSE 31
            Q+     YTQ+S+   A    G G ++ E
Sbjct: 1043 QIMNLKTYTQYSVVVQAFNKVGSGPMSEE 1071


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 5   VSPSRPSKYSDVRKPPPQLRIASVVM 82
           +S    SK S VRK    L +ASV M
Sbjct: 252 LSSDNMSKKSPVRKATLFLNMASVFM 277


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 228  YMTTTLDWHSDVDHREFFLAEQKD 157
            ++TTT+D  +  ++ E  + +QK+
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 65  YATAVAVFLRPNT 27
           YA +VAV  RP+T
Sbjct: 140 YALSVAVIHRPDT 152


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 84  NAACKRASIGLG*XQTAAVQTSG 152
           +A   R S+G+    T A QTSG
Sbjct: 268 SAVPARVSLGVTTLLTMATQTSG 290


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 84  NAACKRASIGLG*XQTAAVQTSG 152
           +A   R S+G+    T A QTSG
Sbjct: 268 SAVPARVSLGVTTLLTMATQTSG 290


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -2

Query: 177 FLAEQKDRFLKFVLQQSGXNQVQWTPVY 94
           FL   K R LK  +       + WTP Y
Sbjct: 250 FLTRAKIRTLKMTVIIIAVFFICWTPYY 277


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 65  YATAVAVFLRPNT 27
           YA +VAV  RP+T
Sbjct: 140 YALSVAVIHRPDT 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,378
Number of Sequences: 438
Number of extensions: 1872
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)