Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30947X
(298 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 110 2e-25
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 109 4e-25
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 108 6e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 38 0.001
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 29 0.74
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 28 0.97
At4g11090.1 68417.m01801 expressed protein other hypothetical pr... 27 1.7
At4g36030.1 68417.m05129 armadillo/beta-catenin repeat family pr... 27 3.0
At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family pr... 26 3.9
At4g11530.1 68417.m01850 protein kinase family protein contains ... 26 3.9
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 26 3.9
At3g23400.1 68416.m02950 plastid-lipid associated protein PAP / ... 26 5.2
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain... 26 5.2
At4g05080.1 68417.m00754 F-box family protein contains Pfam PF00... 25 6.9
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 25 9.1
At5g19630.1 68418.m02336 expressed protein 25 9.1
At4g34940.1 68417.m04953 armadillo/beta-catenin repeat family pr... 25 9.1
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain... 25 9.1
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain... 25 9.1
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 110 bits (264), Expect = 2e-25
Identities = 46/83 (55%), Positives = 67/83 (80%)
Frame = +1
Query: 16 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVD 195
++VQ FGRKKTATAV YCKRG GM+++NG P++L P +L++K+ EP+LLLGK +F+ VD
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 196 IRVPVKGGGHVAQVYAIRQAFRR 264
+R+ GGG+ ++VYAIRQ+ +
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAK 90
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 109 bits (261), Expect = 4e-25
Identities = 46/83 (55%), Positives = 67/83 (80%)
Frame = +1
Query: 16 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVD 195
++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EPILLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67
Query: 196 IRVPVKGGGHVAQVYAIRQAFRR 264
+R+ V GGGH +QVYAIRQ+ +
Sbjct: 68 MRIRVNGGGHTSQVYAIRQSIAK 90
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 108 bits (260), Expect = 6e-25
Identities = 45/83 (54%), Positives = 67/83 (80%)
Frame = +1
Query: 16 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVD 195
++VQ FGRKKTA AV +CKRG G++++NG P++L P +L++K+ EP+LLLGK +F+ V+
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67
Query: 196 IRVPVKGGGHVAQVYAIRQAFRR 264
+R+ V GGGH +QVYAIRQ+ +
Sbjct: 68 MRIRVNGGGHTSQVYAIRQSIAK 90
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 34 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVDIRVPVK 213
GR+K + A + + G G +VN + D+ P +L ++ L + DI+ VK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 214 GGGHVAQVYAIRQAFRR 264
GGG QV AI+ R
Sbjct: 369 GGGTTGQVGAIQLGISR 385
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 28.7 bits (61), Expect = 0.74
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 166 LGKEKFSMVDIRVPVKGGGHVAQVYAIRQAFR 261
+G E+ V I + GGGH A AIR AF+
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 157 ILLLGKEKFSMVDIRVPVKGGGHVAQVYAIRQAFR 261
++ +G E+ V I + GGGH A AIR AF+
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK 94
>At4g11090.1 68417.m01801 expressed protein other hypothetical
proteins - Arabidopsis thaliana
Length = 432
Score = 27.5 bits (58), Expect = 1.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 104 VHWTWLXPDCCSTNFRNLSFCSARKNSLWS 193
++W W DC F +L F +N W+
Sbjct: 121 LNWKWKPNDCSLPRFDSLRFLQLMRNKSWA 150
>At4g36030.1 68417.m05129 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 670
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 270 SEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFLKFVLQQSGXN 118
+EP CL MT + + SD LA DR++K ++++ G N
Sbjct: 144 NEPILCLIWEQIAVLMTGSPEDKSDAAASLASLARDNDRYVKLIVEEGGVN 194
>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 651
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 270 SEPSKCLS-DSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFLKFVLQQSG 124
+EP CL + + + Y T +L+ SD LA DR+ K ++++ G
Sbjct: 142 NEPILCLIWEQIAILY-TGSLEDRSDAAASLVSLARDNDRYTKLIIEEGG 190
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 77 VMECCV*TGVHWTWLXPDCCSTNFRNLSF 163
+ E C +TW PDCC + N+SF
Sbjct: 359 ISESCPNKTDAYTW--PDCCMVRYSNVSF 385
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 77 VMECCV*TGVHWTWLXPDCCSTNFRNLSF 163
++ C V + W PDCC + N+SF
Sbjct: 96 LLRSCPNQTVGYVW--PDCCMVRYSNISF 122
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 279 RRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFL 148
+++ E ++C SD + + H +DHR F+ +Q + L
Sbjct: 496 QKQEEWARCHSDFQKVWAEVYAKNHHKSLDHRSFYFKQQDSKNL 539
>At3g23400.1 68416.m02950 plastid-lipid associated protein PAP /
fibrillin family protein contains Pfam profile PF04755:
PAP_fibrillin
Length = 284
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 11 PSRPSKYSDVRKPPPQLR 64
PS P+ SD R PPP +R
Sbjct: 12 PSPPALLSDHRSPPPSIR 29
>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1362
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = -2
Query: 279 RRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFL 148
+++ E ++C ++ + T ++H +DHR F+ +Q + L
Sbjct: 611 QKQEEWARCRTEFNKVWADIYTKNYHRSLDHRSFYFKQQDSKNL 654
>At4g05080.1 68417.m00754 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 391
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 267 EPSKCLSDSVNLCYMTT--TLDWHSDVDHREFFLAEQK 160
EP+ S CY+ LD+ D+D+ FF+ E+K
Sbjct: 264 EPNALSWTSFLKCYIEQLIALDFWFDIDYNNFFIDEEK 301
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 154 PILLLGKEKFSMVDIRVPVKGGGHVA 231
P+L L + K S V+ RV V+ GH+A
Sbjct: 139 PLLELMRRKMSWVEQRVVVRALGHLA 164
>At5g19630.1 68418.m02336 expressed protein
Length = 228
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 156 YPFARQGKILYGRHQSA 206
YPF IL+GRH A
Sbjct: 144 YPFGLMASILFGRHHKA 160
>At4g34940.1 68417.m04953 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 664
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -2
Query: 270 SEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFLKFVLQQSG 124
+EP CL T +LD SD LA DR+ + ++++ G
Sbjct: 141 NEPILCLIWEQVAILFTGSLDDRSDAAASLVSLARDNDRYGRLIIEEGG 189
>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1159
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = -2
Query: 279 RRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFL 148
+++ E ++C +D + + H +DHR F+ +Q + L
Sbjct: 459 QKQEEWARCRADFRKVWAEVYAKNHHKSLDHRSFYFKQQDSKNL 502
>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1353
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = -2
Query: 279 RRRSEPSKCLSDSVNLCYMTTTLDWHSDVDHREFFLAEQKDRFL 148
+++ E ++C SD + +++ +DHR F+ +Q + L
Sbjct: 596 QKQEEWARCRSDFDKVWAEIYAKNYYKSLDHRSFYFKQQDSKKL 639
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,159,048
Number of Sequences: 28952
Number of extensions: 133569
Number of successful extensions: 403
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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