Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30946
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    68   1e-12
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
 Frame = +1

Query: 487 IRILFYYLQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIC----YIRHLN 654
           +  LF   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+     Y  HL 
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLT 240

Query: 655 N 657
           N
Sbjct: 241 N 241



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
 Frame = +2

Query: 299 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 472
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 473 FLTILLGFYF 502
           ++TI L F F
Sbjct: 176 YMTIALSFLF 185



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 147 YQ*WRDISREGTYQGKHTILVNKGLR*G 230
           Y  +RD+S E    G HT  V KGL+ G
Sbjct: 65  YLWFRDMSTEANIHGAHTKAVTKGLKIG 92


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 466 KIIFNYFIRILFYYLQAYE-YIEASFTI---ADRIYGSTFFIATGFH 594
           K IF+Y I +LFY L   E ++   F I   + +I+     +   FH
Sbjct: 377 KSIFSYIIGVLFYGLHIPERFLPGKFDIIGNSHQIWHIAIIVGVAFH 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,483
Number of Sequences: 5004
Number of extensions: 36122
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)