Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30946
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    82   4e-16
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   3.6  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   3.6  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +1

Query: 469 IIFNYFIRILFYYLQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRH 648
           ++    + ++F   Q  EY +A FTI+D IYGSTFF+ATGFHG HVIIGTLFL+IC IR 
Sbjct: 166 LVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQ 225

Query: 649 LNNH 660
              H
Sbjct: 226 YLGH 229



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 31/74 (41%), Positives = 43/74 (58%)
 Frame = +2

Query: 299 LSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFL 478
           L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  
Sbjct: 109 LAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVA 168

Query: 479 TILLGFYFTIYKHM 520
           T+LL   FT ++ M
Sbjct: 169 TVLLALVFTGFQGM 182



 Score = 37.1 bits (82), Expect = 0.010
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 6   FHLVDYRP*PFTGAIGVLTLITGXXXXXXXXXXXXXXXXXXXXXXX--AYQ*WRDISREG 179
           +HLVD  P P +G++G L    G                          +  WRD+ RE 
Sbjct: 9   YHLVDPSPWPISGSLGALATTVGGVMYMHPFQGGARLLSLGLIFILYTMFVWWRDVLRES 68

Query: 180 TYQGKHTILVNKGLR*G 230
           T +G HT +V  G R G
Sbjct: 69  TLEGHHTKVVQLGPRYG 85


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 LQAYEYIEASFTIADRIYGSTFFIATGFHG 597
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 508 LQAYEYIEASFTIADRIYGSTFFIATGFHG 597
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,452,793
Number of Sequences: 28952
Number of extensions: 165005
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)