Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30945
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 32 0.43
05_03_0557 - 15441039-15442730 30 1.3
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 30 1.7
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 30 1.7
03_02_0137 + 5832608-5833590,5833680-5833731,5833827-5833904,583... 30 1.7
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 30 1.7
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 30 1.7
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 28 5.2
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 28 6.9
07_03_1160 - 24430240-24431268 28 6.9
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 28 6.9
03_02_0062 - 5347798-5347814,5347997-5348672 28 6.9
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 9.2
06_01_0111 + 870781-871017,871194-871240,871681-871947,872196-87... 27 9.2
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 27 9.2
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 27 9.2
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 103
K ++P+A F EVS + + W L +E K Y+++
Sbjct: 176 KKESPDADFKEVSNALGAKWKALGAEEKQPYEER 209
>05_03_0557 - 15441039-15442730
Length = 563
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = -2
Query: 436 YWLGNFEEIVES*VDTVELARDMRVVADQVSNFAESIFEGKHFAHSSEANDYFHKSVLGS 257
+W F + +DT M A V + A FEG++FA S+A S+LG+
Sbjct: 358 FWEALFTFLYVDILDTTGGLYSMARFAGFVDD-ATGDFEGQYFAFMSDATAIVFGSLLGT 416
Query: 256 STVCGATVSSTHI 218
S V SST I
Sbjct: 417 SPVTAFIESSTGI 429
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
DT+E RD++ V DQ S F + FE
Sbjct: 217 DTIEKGRDIKTVLDQYSKFVKPAFE 241
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 478 SPQGYQINSSSQIRIVNQMLLNHLETTNPHSHQQITLQVLQCHHLGT 618
+PQGYQ + + Q L L+ + H QQ+ LQ Q HHL T
Sbjct: 385 NPQGYQRSHIQSLLAAQQ--LQQLQIHSQHQQQQMHLQ--QHHHLST 427
>03_02_0137 +
5832608-5833590,5833680-5833731,5833827-5833904,
5835228-5835347,5835618-5835716,5835821-5835975,
5836117-5836257,5836395-5836503
Length = 578
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 510 SNQNCQPNVAQSPRNYQPTQSPTNYPASSSMS 605
S++N PN+ SP +P +SPT S+S S
Sbjct: 80 SSENAHPNILGSPPPSKPAKSPTTASKSASAS 111
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
DT+E RD++ V DQ S F + FE
Sbjct: 192 DTIEKGRDIKTVLDQYSKFVKPAFE 216
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
K NP+ E++K + MW + E K Y Q++++
Sbjct: 618 KNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQV 654
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 450 PNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSP 608
P+ P SSP T + F S+ + +PR+ +SP P + + SP
Sbjct: 45 PSSPSSSSPSTPTAAGLSFLSSPGSSASPNPAPRSRSSRRSPLASPRTGTASP 97
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 95 CKHFYVLSLNHPTLKQLSLKLPQ 27
CKH V SL+H LS+ LPQ
Sbjct: 377 CKHCSVRSLSHDVFHDLSVPLPQ 399
>07_03_1160 - 24430240-24431268
Length = 342
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +3
Query: 423 LPSQYDNCSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSM 602
+P Q +PN P + + N K +Q QPN P+ QP Q + P
Sbjct: 211 VPDQSTQPNPNGPSIPNQPPQPIPNGPIKPDQPPQPNPDMPPKPDQPPQPCPDGPPKPDQ 270
Query: 603 SP 608
P
Sbjct: 271 PP 272
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 373 DMRVVADQVSNFAESIFEGKHFAHSSEANDYFHKSV 266
D VV D + +FAESI G+HF D FH S+
Sbjct: 531 DHYVVHDLLHDFAESISNGEHF----RIEDDFHVSI 562
>03_02_0062 - 5347798-5347814,5347997-5348672
Length = 230
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = +1
Query: 484 QGYQINSSSQIRIVNQMLLNHLETTNPHSH 573
+G+Q+ S ++++ Q L++ + +NP +H
Sbjct: 104 EGFQVRGSLSVQVLAQDLIDRVPASNPRAH 133
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 468 SSPITTGLSNKLFKSNQNCQPNVAQS 545
+ PI LS K Q C+PNVAQ+
Sbjct: 2536 AKPIIALLSKDYHKRQQGCRPNVAQA 2561
>06_01_0111 +
870781-871017,871194-871240,871681-871947,872196-872848,
872997-873043,873124-873169,873371-873416,873592-873720,
873822-873942
Length = 530
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 432 QYDNCSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNY-PASSSMSP 608
+Y N+P ++ T +NKL + N V +P + P+Q+PT P+SSS SP
Sbjct: 186 RYAAMQSNMPPITTE-TIETANKLRQDLTNAS-TVNSAPMSNTPSQTPTFVSPSSSSTSP 243
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 448 PQTYQNVPAQSPQGYQINSSSQIRIVNQMLL 540
P Y P SPQGY + Q++ QM++
Sbjct: 569 PMVYNAQPGPSPQGYMHPAGPQLQYGQQMMM 599
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 35 VSKIVASMWDGLDSEHKSVYKQK 103
+SK++ W+ L E K+VY++K
Sbjct: 405 ISKMIGERWNNLGPEDKAVYQEK 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,297
Number of Sequences: 37544
Number of extensions: 253547
Number of successful extensions: 847
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -