Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30945
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 46 3e-05
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 32 0.33
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 31 0.76
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 31 1.0
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 31 1.0
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 30 1.8
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 30 1.8
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.3
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 29 2.3
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 3.1
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.4
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 28 7.1
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 27 9.4
SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066) 27 9.4
SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
QNP+A FGE++KIV MW+ L E K VY K E
Sbjct: 946 QNPSAQFGEIAKIVGQMWENLPEEQKKVYHCKHE 979
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYK 97
K NPNAS G +SK++ MW + + K+ Y+
Sbjct: 121 KKDNPNASGGALSKVLGEMWSKMTDDDKTQYQ 152
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 32.3 bits (70), Expect = 0.33
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
+ +NP+ F EV++I+ +MW L + K ++ ++ E
Sbjct: 196 RSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAE 231
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
+NP+ +V KI W GLDS K V+ +K +
Sbjct: 350 ENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKAK 383
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
++P +FGE+S+++ W + K+ Y+ K ++
Sbjct: 56 EHPEYAFGEISRLIGEEWRNASAARKAEYENKAQM 90
>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 789
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 426 PSQYDNCSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMS 605
P+ Y +P S+ T ++ + N P A Y P SP +YPASS S
Sbjct: 415 PAPYQAPAPETYAASANTTAA---EISQQNYTASPTAAYPA--YYPASSPVSYPASSPAS 469
Query: 606 PPGY 617
P +
Sbjct: 470 YPAF 473
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 537 AQSPRNYQPTQSPTNYPASSSMSPP 611
A SP +Y P SP +YPASS S P
Sbjct: 464 ASSPASY-PAFSPASYPASSPASYP 487
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
++P +FGE+S+++ W + K+ Y+ K ++
Sbjct: 1289 EHPEYAFGEISRLIGEEWRNASAARKAEYENKAQM 1323
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHK 85
K QNP+ ++ KI+ MW LD K
Sbjct: 47 KNQNPDFKLWDIGKIIGQMWRDLDDAEK 74
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
K +NP S EVSK+ MW L KS +++K I
Sbjct: 561 KDKNPGISVTEVSKVAGEMWKNLTD--KSKWEEKAAI 595
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 429 SQYDNCSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNY 584
S YD P +P+ SS + + ++ P V Q PRNY+P++S Y
Sbjct: 2018 SMYDG--PQVPKRSSSLMSS------SDEEDDIPEVPQRPRNYRPSESEDGY 2061
>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 412
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 447 SPNIPECSSPITTGLSNKLFKSNQN-CQPNVAQSPRNYQPTQSPTNYPASSSMSPPGY 617
SP +SP + +S + N CQ A S P ++P PA ++ PGY
Sbjct: 26 SPYASAMASPYASAMSAPCVPTPANPCQTPAAASQARPAPGRAPARNPAQQRVNLPGY 83
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 528 PNVAQSPRNYQPTQSPTNYPASSSMSPPG 614
P A +P+ Y P+ +PT Y A +PPG
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGP-APPG 742
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
K Q+P+ +F E++K++ W+ L E K + + E
Sbjct: 216 KHQHPHLTFPEITKMLGQEWNSLLPEEKQKFLDEAE 251
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 171 VENKKTKQCTT-TLIMVMCVELTVAPHTVLLPRT 269
V+ KTKQ TT T E TVAP T ++P T
Sbjct: 1685 VDQLKTKQPTTATAKTTAAPETTVAPETTVVPET 1718
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +3
Query: 462 ECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSPPGY 617
+CS P TG S + K + QP+ + SP A P GY
Sbjct: 342 QCSPPSRTGRSKTIHKRPRMTQPDSRNVSSTSRDKSSPDESSARGFTRPDGY 393
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +3
Query: 438 DNCSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSP 608
D C P C I + +F NCQ + +S ++ P +PA++ +P
Sbjct: 1202 DTCDPESGVC---IDCQHNTTVFNLRFNCQVTIVRSAQSVSMATPPMEHPATAESAP 1255
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
+NP E+SK++ W+ L ++ K + +K E
Sbjct: 115 ENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAE 148
>SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)
Length = 727
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 510 SNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSPPG 614
++Q+ +P + +SP +P Q+P N P +S G
Sbjct: 656 NDQSAEPRIKKSPVASRPGQAPVNLPHMDPVSLAG 690
>SB_23499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +3
Query: 426 PSQYDNCSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMS 605
PS + + P+I S P + S + A P + QP P + PAS S
Sbjct: 31 PSIHPSIHPSIQPASQPASQPASQPASQPASQPASQPASQPAS-QPASQPASQPASQPAS 89
Query: 606 PP 611
P
Sbjct: 90 QP 91
>SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 106 RNSKKRIP*GSCCLQSQSSIKGWRTRKPSNVQPH 207
R KK + + ++ + ++KGWR + PS + H
Sbjct: 354 RPRKKAVDTSNMYVRGEENLKGWRPKGPSLIDEH 387
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,306,618
Number of Sequences: 59808
Number of extensions: 317966
Number of successful extensions: 1156
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -