Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30945
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.60 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 296 RTMCKMLPLKDTLRKITHLVSHNPHIPGQLNSIHLT 403
           +T+ K++   DTLRKI      NP  P  ++   LT
Sbjct: 890 QTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLT 925


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 550 ETTNPHSHQQITLQVLQCHHLG 615
           E    H  QQI   V  CHH G
Sbjct: 8   EADASHCIQQILESVHHCHHNG 29


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 451 QTYQNVPAQSPQGYQINSSSQIRIVNQMLLNHLETTNPHSHQQITL 588
           Q  QN+  Q+ QG     +  I +    LL+H E    +  Q I L
Sbjct: 173 QEAQNIAIQNTQGKNNQQNILIPVNYSALLSHDEQQLSYFTQDIGL 218


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 274 KSVLGSSTVCGATVSSTHITII 209
           K VL SST   + ++ST  TI+
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIV 341


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 320 LKDTLRKITHLVSHNPHIPGQLNSIH 397
           LKD+  K T  +S +P+   Q+N  H
Sbjct: 672 LKDSRIKTTEKLSTDPNTHFQVNQSH 697


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 474 PITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSPPG 614
           PI T  S +        QP+  QSP+  Q    P          PPG
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 570 SPTNYPASSSMSPPGY 617
           SP  YP+++   PP Y
Sbjct: 301 SPGVYPSTAGFLPPSY 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,182
Number of Sequences: 438
Number of extensions: 3134
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)