Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30945
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    38   0.004
At3g24550.1 68416.m03083 protein kinase family protein contains ...    31   0.82 
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    31   0.82 
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat...    29   2.5  
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat...    29   2.5  
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat...    29   2.5  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    29   3.3  
At3g10960.1 68416.m01321 xanthine/uracil permease family protein...    28   5.8  
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c...    28   5.8  
At1g58070.1 68414.m06581 expressed protein                             27   7.7  

>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 103
           K QNP A F E S I+ + W G+ +E K  Y++K
Sbjct: 148 KKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 426 PSQYDNCSPNIPECS--SPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSS 599
           PS   + +P +P+ S  +PIT    +    SN    P+  Q P N  P+ S    P+++ 
Sbjct: 67  PSPPGSLTPPLPQPSPSAPITPSPPSPTTPSNPRSPPSPNQGPPN-TPSGSTPRTPSNTK 125

Query: 600 MSPP 611
            SPP
Sbjct: 126 PSPP 129


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 543 SPRNYQPTQSPTNYPASSSMSPPGY 617
           SPR Y P+ SP  Y  +SS  PP Y
Sbjct: 588 SPREYYPSPSPPYYQYTSSPPPPTY 612


>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  FE
Sbjct: 186 DTVEKGRDIATVLDQYSKFVKPAFE 210


>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  FE
Sbjct: 186 DTVEKGRDIATVLDQYSKFVKPAFE 210


>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  FE
Sbjct: 186 DTVEKGRDIATVLDQYSKFVKPAFE 210


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +3

Query: 450 PNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSPP 611
           PN PE SS      S+    SN N  PN  +S  N  P  +  N P SSS   P
Sbjct: 129 PNPPESSSNPNPPDSS----SNPNSNPNPPESSSNPNPPVTVPNPPESSSNPNP 178


>At3g10960.1 68416.m01321 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 579

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = -2

Query: 325 FEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHI--------TIISVVVHCLVFLFST 170
           F G++FA  S+A+     S+LG+S V     SST I        T I+V V+ L+ +F T
Sbjct: 414 FAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAITVAVYFLLAMFFT 473


>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 163

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 444 CSPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPTNYPASSSMSPP 611
           C+ N     S  T  L +K F+  Q+ + N + +      + +     ASSS+SPP
Sbjct: 13  CANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAASSSVSPP 68


>At1g58070.1 68414.m06581 expressed protein
          Length = 284

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 447 SPNIPECSSPITTGLSNKLFKSNQNCQPNVAQSPRNYQPTQSPT-NYPASSSMSP 608
           S +I + + P + GLS  +        P+++Q+ +   P  SP+ +  ASSS SP
Sbjct: 57  SRSINQNAKPRSPGLSQTVKLVIPTASPSISQTAKLVSPIASPSISQTASSSSSP 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,603
Number of Sequences: 28952
Number of extensions: 219332
Number of successful extensions: 734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)