Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30944X
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 31 0.070
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 31 0.12
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.21
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 28 0.86
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 25 4.6
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 25 4.6
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 4.6
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 6.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 6.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 8.0
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 31.5 bits (68), Expect = 0.070
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 103
K NP+A+FG++ ++ W L S + Y++K
Sbjct: 35 KTDNPDATFGQLGSLLGKRWKELTSTEREPYEEK 68
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 30.7 bits (66), Expect = 0.12
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 361 VADQVSNFAESIFEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHITIISVVVHCL 188
+A+ VSNF ES+ +F++S + + L T+C V + I+SV H L
Sbjct: 121 LAESVSNFGESV---NNFSNSEHQENGTNSLKLSEVTICSVAVINPSSQIVSVRFHPL 175
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 29.9 bits (64), Expect = 0.21
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 194 LLGFLVLHPLILDWLCRQQEP*GILFLLFLSFVCKHFY 81
++ FL LHP + R+++ G+L L FL K FY
Sbjct: 414 VVSFLQLHPRLSTGSMREEDNFGVLLLEFLELYGKQFY 451
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 27.9 bits (59), Expect = 0.86
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -1
Query: 358 ADQVSNFAESIFEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHITIISVVVHCLVFL 179
AD ++ + F+G SSE ++F K ++ + H+++I+ +V C L
Sbjct: 289 ADHLTELTDVSFQGAFLVSSSEWINFFKKRGSKLISLELTDTARIHVSVINAIVDCCPNL 348
Query: 178 FS 173
S
Sbjct: 349 IS 350
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 11 NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
NP+ + +VSK+V MW E + Y + +E
Sbjct: 125 NPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.4 bits (53), Expect = 4.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 11 NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
NP+ + +VSK+V MW E + Y + +E
Sbjct: 125 NPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 128 GILFLLFLSFVCKHFYVLSLNHPTLKQL 45
G F LFLS +C +Y LN+P+ +L
Sbjct: 263 GNFFPLFLSILCVGYYHHLLNNPSNTEL 290
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 421 FEEIVES*VDTVELARDMRVVADQVSNFAESI 326
FE + + DT+E + V D + NFAESI
Sbjct: 738 FEAVRKCTFDTLEEEYEKTVATDILRNFAESI 769
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 11 NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
NPN S +++ VA LDS+ S++K+ E+
Sbjct: 1013 NPNVSIDTMTEGVALPSATLDSDKSSLHKRSAEL 1046
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 308 KMLPLKDTLRKITHLVSHNPHIPGQLNSIHLTLNNLLKITKPI*QLLPKHTR 463
K L +K+T+ K+T L N QL L N + + +LL + T+
Sbjct: 479 KQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLREQTQ 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,117
Number of Sequences: 5004
Number of extensions: 27264
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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