Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30944X
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 32 0.28
05_03_0557 - 15441039-15442730 30 0.86
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 30 1.1
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 30 1.1
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 30 1.1
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783... 28 4.6
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 28 4.6
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 27 6.0
06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141... 27 8.0
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 31.9 bits (69), Expect = 0.28
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 103
K ++P+A F EVS + + W L +E K Y+++
Sbjct: 176 KKESPDADFKEVSNALGAKWKALGAEEKQPYEER 209
>05_03_0557 - 15441039-15442730
Length = 563
Score = 30.3 bits (65), Expect = 0.86
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = -1
Query: 436 YWLGNFEEIVES*VDTVELARDMRVVADQVSNFAESIFEGKHFAHSSEANDYFHKSVLGS 257
+W F + +DT M A V + A FEG++FA S+A S+LG+
Sbjct: 358 FWEALFTFLYVDILDTTGGLYSMARFAGFVDD-ATGDFEGQYFAFMSDATAIVFGSLLGT 416
Query: 256 STVCGATVSSTHI 218
S V SST I
Sbjct: 417 SPVTAFIESSTGI 429
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
DT+E RD++ V DQ S F + FE
Sbjct: 217 DTIEKGRDIKTVLDQYSKFVKPAFE 241
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
DT+E RD++ V DQ S F + FE
Sbjct: 192 DTIEKGRDIKTVLDQYSKFVKPAFE 216
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
K NP+ E++K + MW + E K Y Q++++
Sbjct: 618 KNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQQSQV 654
>08_02_1343 -
26274788-26275019,26275972-26276611,26277174-26278367,
26278515-26278701
Length = 750
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 95 CKHFYVLSLNHPTLKQLSLKLPQ 27
CKH V SL+H LS+ LPQ
Sbjct: 377 CKHCSVRSLSHDVFHDLSVPLPQ 399
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 373 DMRVVADQVSNFAESIFEGKHFAHSSEANDYFHKSV 266
D VV D + +FAESI G+HF D FH S+
Sbjct: 531 DHYVVHDLLHDFAESISNGEHF----RIEDDFHVSI 562
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 35 VSKIVASMWDGLDSEHKSVYKQK 103
+SK++ W+ L E K+VY++K
Sbjct: 405 ISKMIGERWNNLGPEDKAVYQEK 427
>06_01_0182 +
1413551-1413794,1413883-1414139,1414241-1414387,
1414487-1414804
Length = 321
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 11 NPNASFGEVSKIVASMWDGLDSEHKSVYKQK 103
N ASFGE+ K+VA+ + K +YK K
Sbjct: 76 NSQASFGELKKMVAARTGLHPDDQKVMYKDK 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,639,320
Number of Sequences: 37544
Number of extensions: 159933
Number of successful extensions: 441
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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