Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30944X
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 46 2e-05
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.071
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 32 0.22
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 31 0.50
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 31 0.67
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 30 1.2
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 30 1.2
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 3.6
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 27 6.2
SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 27 8.2
SB_28169| Best HMM Match : Paramyxo_C (HMM E-Value=8.7) 27 8.2
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
QNP+A FGE++KIV MW+ L E K VY K E
Sbjct: 946 QNPSAQFGEIAKIVGQMWENLPEEQKKVYHCKHE 979
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 33.9 bits (74), Expect = 0.071
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYK 97
K NPNAS G +SK++ MW + + K+ Y+
Sbjct: 121 KKDNPNASGGALSKVLGEMWSKMTDDDKTQYQ 152
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 32.3 bits (70), Expect = 0.22
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
+ +NP+ F EV++I+ +MW L + K ++ ++ E
Sbjct: 196 RSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAE 231
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 31.1 bits (67), Expect = 0.50
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
+NP+ +V KI W GLDS K V+ +K +
Sbjct: 350 ENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKAK 383
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 30.7 bits (66), Expect = 0.67
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
++P +FGE+S+++ W + K+ Y+ K ++
Sbjct: 56 EHPEYAFGEISRLIGEEWRNASAARKAEYENKAQM 90
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 30.7 bits (66), Expect = 0.67
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
++P +FGE+S+++ W + K+ Y+ K ++
Sbjct: 1289 EHPEYAFGEISRLIGEEWRNASAARKAEYENKAQM 1323
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHK 85
K QNP+ ++ KI+ MW LD K
Sbjct: 47 KNQNPDFKLWDIGKIIGQMWRDLDDAEK 74
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
K +NP S EVSK+ MW L KS +++K I
Sbjct: 561 KDKNPGISVTEVSKVAGEMWKNLTD--KSKWEEKAAI 595
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 2 KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
K Q+P+ +F E++K++ W+ L E K + + E
Sbjct: 216 KHQHPHLTFPEITKMLGQEWNSLLPEEKQKFLDEAE 251
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 171 VENKKTKQCTT-TLIMVMCVELTVAPHTVLLPRT 269
V+ KTKQ TT T E TVAP T ++P T
Sbjct: 1685 VDQLKTKQPTTATAKTTAAPETTVAPETTVVPET 1718
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
+NP E+SK++ W+ L ++ K + +K E
Sbjct: 115 ENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAE 148
>SB_22635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 106 RNSKKRIP*GSCCLQSQSSIKGWRTRKPSNVQPH 207
R KK + + ++ + ++KGWR + PS + H
Sbjct: 354 RPRKKAVDTSNMYVRGEENLKGWRPKGPSLIDEH 387
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 8 QNPNASFGEVSKIVASMWDGLDSEHKSVYK 97
+NP+ +V KI W GLDS K + K
Sbjct: 57 ENPDIPDEDVVKIAMKTWKGLDSVEKKLEK 86
>SB_28169| Best HMM Match : Paramyxo_C (HMM E-Value=8.7)
Length = 443
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 346 SNFAESIFEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHITIISVVVHCLVFL 179
S F S F F S+ + F+ S + STV +TV + + VH VFL
Sbjct: 267 STFNSSTFNSSTFNSSTFNSSTFNSSTVQRSTVQRSTVQRSTVQRSQSNVHSSVFL 322
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,230
Number of Sequences: 59808
Number of extensions: 203765
Number of successful extensions: 610
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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