Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30944X
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    41   5e-04
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    41   5e-04
Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical pr...    41   5e-04
Z99171-6|CAB16309.2|  128|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U22831-3|AAK67237.1|  234|Caenorhabditis elegans Hmg protein 1.2...    27   7.2  
U22831-2|AAK67238.1|  233|Caenorhabditis elegans Hmg protein 1.2...    27   7.2  
U22831-1|AAK20071.1|  235|Caenorhabditis elegans Hmg protein 1.2...    27   7.2  
U00047-2|AAA50688.2|  275|Caenorhabditis elegans Abnormal cell l...    27   7.2  
AF056577-1|AAC78599.1|  235|Caenorhabditis elegans high mobility...    27   7.2  

>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 8    QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
            +NP+A FGEVSKIV   W  L  E K  Y+ + E+
Sbjct: 1470 ENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 1504


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 8    QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
            +NP+A FGEVSKIV   W  L  E K  Y+ + E+
Sbjct: 1470 ENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 1504


>Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical
           protein C26C6.1b protein.
          Length = 513

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 8   QNPNASFGEVSKIVASMWDGLDSEHKSVYKQKTEI 112
           +NP+A FGEVSKIV   W  L  E K  Y+ + E+
Sbjct: 100 ENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEV 134


>Z99171-6|CAB16309.2|  128|Caenorhabditis elegans Hypothetical
           protein F47G4.6 protein.
          Length = 128

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 14  PNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
           P A+FG++S+ +A  WD L  E K  YKQ+ E
Sbjct: 72  PYATFGQISQKIARQWDSLTEEEKKAYKQRCE 103


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 122 LFLLFLSFVCKHFYVLSLNHPTLKQLSLKL 33
           L+LLFLSFV + +YV+    PT K L + +
Sbjct: 104 LWLLFLSFVYR-YYVIIRQEPTKKVLQISV 132


>Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 358 ADQVSNFAESIFEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHITIISVVVHCLVFL 179
           AD +  F  +  E +HF    E+ND FHKS         ++ ++  +T   ++  C VFL
Sbjct: 271 ADYIDMFLNARAEVEHFG---ESNDEFHKS---------SSYNNRQLTTQEIISQCFVFL 318


>Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 358 ADQVSNFAESIFEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHITIISVVVHCLVFL 179
           AD +  F  +  E +HF    E+ND FHKS         ++ ++  +T   ++  C VFL
Sbjct: 271 ADYIDMFLNARAEVEHFG---ESNDEFHKS---------SSYNNRQLTTQEIISQCFVFL 318


>U22831-3|AAK67237.1|  234|Caenorhabditis elegans Hmg protein 1.2,
           isoform b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 11  NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
           +P+   G+V++ +  MW  +  E K +Y+QK +
Sbjct: 156 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 188


>U22831-2|AAK67238.1|  233|Caenorhabditis elegans Hmg protein 1.2,
           isoform c protein.
          Length = 233

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 11  NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
           +P+   G+V++ +  MW  +  E K +Y+QK +
Sbjct: 155 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 187


>U22831-1|AAK20071.1|  235|Caenorhabditis elegans Hmg protein 1.2,
           isoform a protein.
          Length = 235

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 11  NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
           +P+   G+V++ +  MW  +  E K +Y+QK +
Sbjct: 157 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 189


>U00047-2|AAA50688.2|  275|Caenorhabditis elegans Abnormal cell
           lineage protein 37 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 314 LPLKDTLRKITHLVSHNPHIP--GQLNSIHLTLNNLLKITK 430
           LPL+   RK+T L+S++P +P    +      L NLL   K
Sbjct: 32  LPLESPSRKLTSLLSYDPTVPESPDMKFARKRLGNLLTTIK 72


>AF056577-1|AAC78599.1|  235|Caenorhabditis elegans high mobility
           group protein 1.2 protein.
          Length = 235

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 11  NPNASFGEVSKIVASMWDGLDSEHKSVYKQKTE 109
           +P+   G+V++ +  MW  +  E K +Y+QK +
Sbjct: 157 HPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,724
Number of Sequences: 27780
Number of extensions: 151970
Number of successful extensions: 444
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)