Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30944X
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.43 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 296 RTMCKMLPLKDTLRKITHLVSHNPHIPGQLNSIHLT 403
           +T+ K++   DTLRKI      NP  P  ++   LT
Sbjct: 890 QTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLT 925


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 274 KSVLGSSTVCGATVSSTHITII 209
           K VL SST   + ++ST  TI+
Sbjct: 320 KPVLSSSTTTTSPMTSTKSTIV 341


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 320 LKDTLRKITHLVSHNPHIPGQLNSIH 397
           LKD+  K T  +S +P+   Q+N  H
Sbjct: 672 LKDSRIKTTEKLSTDPNTHFQVNQSH 697


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 442 LSYWLGNFEEIV 407
           LSYW GN   ++
Sbjct: 70  LSYWRGNLANVI 81


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 442 LSYWLGNFEEIV 407
           LSYW GN   ++
Sbjct: 70  LSYWRGNLANVI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,045
Number of Sequences: 438
Number of extensions: 1883
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)