Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30944X
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    38   0.003
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat...    29   1.7  
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat...    29   1.7  
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat...    29   1.7  
At3g10960.1 68416.m01321 xanthine/uracil permease family protein...    28   3.8  
At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS cla...    27   6.7  
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ...    27   6.7  
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ...    27   6.7  
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro...    27   8.9  

>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   KGQNPNASFGEVSKIVASMWDGLDSEHKSVYKQK 103
           K QNP A F E S I+ + W G+ +E K  Y++K
Sbjct: 148 KKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181


>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  FE
Sbjct: 186 DTVEKGRDIATVLDQYSKFVKPAFE 210


>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  FE
Sbjct: 186 DTVEKGRDIATVLDQYSKFVKPAFE 210


>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 466

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  FE
Sbjct: 186 DTVEKGRDIATVLDQYSKFVKPAFE 210


>At3g10960.1 68416.m01321 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 579

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = -1

Query: 325 FEGKHFAHSSEANDYFHKSVLGSSTVCGATVSSTHI--------TIISVVVHCLVFLFST 170
           F G++FA  S+A+     S+LG+S V     SST I        T I+V V+ L+ +F T
Sbjct: 414 FAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAITVAVYFLLAMFFT 473


>At5g46490.2 68418.m05725 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 858

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 29  GEVSKIVASMWDGLDSEHKSVYK 97
           G++ KI+   +DGLDSE + +++
Sbjct: 418 GKIEKILRISYDGLDSEDQEIFR 440


>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
           pyrophosphorylase (UPT1) nearly identical to SP|O65583
           Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
           pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
          Length = 402

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  F+
Sbjct: 122 DTVENGRDIGTVLDQYSKFVKPAFD 146


>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
           pyrophosphorylase (UPT1) nearly identical to SP|O65583
           Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
           pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
          Length = 402

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 394 DTVELARDMRVVADQVSNFAESIFE 320
           DTVE  RD+  V DQ S F +  F+
Sbjct: 122 DTVENGRDIGTVLDQYSKFVKPAFD 146


>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 907

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 420 KLPSQYDNCSPNIPECSS 473
           KL S  ++C+ NIPECSS
Sbjct: 518 KLYSVGESCNENIPECSS 535


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,008
Number of Sequences: 28952
Number of extensions: 139532
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)