Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30941X
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    29   2.4  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    28   3.1  
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411     28   4.2  
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599...    27   7.3  
04_01_0073 + 786594-786786,787571-787603,787814-788005,788176-78...    27   7.3  
01_01_0233 - 1957104-1958041,1958213-1958467,1959420-1960136,196...    27   7.3  
03_01_0436 + 3384526-3385236,3387857-3388720                           27   9.6  

>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 167 FEIIKNLRLSPSAFNDSLHFVVSTSGELLT**GGSRICIDIKKHDN 30
           +  ++ LRL PSAF  S  F+V     +L+   G+ +C    KH N
Sbjct: 444 YSFVRLLRLYPSAFEFSSKFLVDFMDCVLSCRFGNFLCNSFHKHRN 489


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 248 PSRLQRYHYTNSDKAFVCLHCQLR 319
           P  L +Y Y NS +   C+HC  R
Sbjct: 316 PYELNQYDYNNSPEQCTCMHCVAR 339


>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
          Length = 220

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 410 YRSXDFWSYKASPFP*VTRCKVFCLFLSCFHVTDNANTQKPYH 282
           Y   +FW       P V  C +    LSCF V D   T K YH
Sbjct: 177 YHVPEFWRGST---PTVRYCIIHLFGLSCFFVFDGFLTVKKYH 216


>08_01_0683 +
           5991905-5992055,5993262-5993451,5993701-5993772,
           5994016-5994084,5994189-5994260,5994440-5994511,
           5994623-5994694,5994777-5994848,5995276-5995347,
           5995452-5995526,5995929-5996005,5996417-5996781,
           5996872-5997070,5997151-5997309,5997391-5997509,
           5997624-5997641,5997701-5997851,5997959-5998190,
           5998272-5998422,5998517-5998876
          Length = 915

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
 Frame = +3

Query: 180 YGPLLGEL-ITSMDIKTQLNGTCRHRGYNVIIIQIVIRLLCVC------IVSYVKTREKE 338
           YGP++  L IT     T  NG  + +    +I  IVI    +       I   VK R K 
Sbjct: 508 YGPMISALSITPNFTPTVRNGVPKKKSKAGVIAGIVIGASVIGSAALLGIFVLVKKRRKA 567

Query: 339 TKNFASCYLWKGRCFIRPKVXASIDLNLDIGSFSSEAI 452
            +     Y   GR    P + +S +L L   +FSS+ +
Sbjct: 568 ARQQEELYNLVGR----PNIFSSAELKLATDNFSSQNV 601


>04_01_0073 +
           786594-786786,787571-787603,787814-788005,788176-788903
          Length = 381

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 215 HGCYKLTKKWSVSSFAFEIIKNLRLSPS 132
           H CYKLT K  V SF   +I+ +   P+
Sbjct: 295 HQCYKLTDKSDVYSFGVVLIELISSKPA 322


>01_01_0233 -
           1957104-1958041,1958213-1958467,1959420-1960136,
           1960728-1961403
          Length = 861

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 215 HGCYKLTKKWSVSSFAFEIIKNLRLSPS 132
           H CYKLT K  V SF   +I+ +   P+
Sbjct: 705 HQCYKLTDKSDVYSFGVVLIELISSKPA 732


>03_01_0436 + 3384526-3385236,3387857-3388720
          Length = 524

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 236 WHLPPSRLQRYHYTNSDKA---FVCLHCQLRENTRERDK 343
           WH+ PSR+  Y + N+  +   +   +C+ +   R  D+
Sbjct: 411 WHMEPSRMTLYRFGNTSSSSLWYELSYCEAKGRIRRGDR 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,621
Number of Sequences: 37544
Number of extensions: 215426
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)