Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30941X
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   28   3.2  
SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)              28   4.3  
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    28   4.3  
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 142 NLRFLMISKANELTDHFLVSL*HPWTS 222
           NLR L+ + +N   DH++V   HP+ +
Sbjct: 409 NLRILICTHSNSAADHYIVDYLHPFVT 435


>SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)
          Length = 625

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = +3

Query: 243 CRHRGYNVIIIQIVIRLLCVCIV 311
           CRH G+ ++++ I + +LC+ ++
Sbjct: 199 CRHSGWILVVVFITVVVLCIVVI 221


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 266 NVVTAMAAGAI*LCFDVHGCYKLTKKWSVSSFAFEIIKNLRLSPSAFNDSLHFVVSTSGE 87
           N+      G + L   +HG  KL ++   ++ A   +  L  +    NDSL+ VV   GE
Sbjct: 221 NISALALRGLLGLRLQMHGARKLRREAERNAMAAPNVTGLTYA--VLNDSLYVVVKAIGE 278

Query: 86  LL 81
           ++
Sbjct: 279 MM 280


>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 230 AKWHLPPSRLQRYH 271
           A W LPP+ LQRYH
Sbjct: 215 ASWGLPPAVLQRYH 228


>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 269 HYTNSDKAFVCLHCQLRENTRERD 340
           H TN D   V   C  RENT +RD
Sbjct: 878 HTTNVDTNEVTYSCSCRENTDQRD 901


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,725,927
Number of Sequences: 59808
Number of extensions: 269049
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)