Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30941X
         (460 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20500.1 68415.m02394 expressed protein                             29   1.5  
At1g06270.1 68414.m00663 pentatricopeptide (PPR) repeat-containi...    28   3.5  
At2g32820.1 68415.m04017 hypothetical protein  and genscan             27   4.6  
At5g03110.1 68418.m00259 expressed protein various predicted pro...    27   6.1  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    27   6.1  
At4g12620.1 68417.m01988 replication control protein, putative s...    27   6.1  

>At2g20500.1 68415.m02394 expressed protein
          Length = 136

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 263 RYHYTNSDKAFVCLHCQLRENTRERDKKLCIVLLMERAMLYTTKSR 400
           +Y  + SDK F+    + REN R+RD ++  + L +R  L+  K +
Sbjct: 35  KYKASTSDKHFLRSSHRSRENVRDRDSRVFFIRL-KRGCLFKKKRK 79


>At1g06270.1 68414.m00663 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 343

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 231 LNGTCRHRGYNVIIIQIVIRLLCVCIVSYVKTREKETKNFASCYLWKGRCFIRPKV 398
           + G    R Y ++  ++V+R+     + Y+K R+K  +   +   WK  C +R +V
Sbjct: 284 VEGCLEVREY-ILAGKVVMRMTDRGFIPYIKVRQKVVERLINIGEWKLACTVRQRV 338


>At2g32820.1 68415.m04017 hypothetical protein  and genscan
          Length = 333

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 201 AHQEVVRKLVCLRDHQKPKIK 139
           +H +V+  L  LRDH+ PKI+
Sbjct: 54  SHSKVILPLESLRDHENPKIR 74


>At5g03110.1 68418.m00259 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 283

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 268 ITL*PRWRQVPFSCVLMSMDVISSPRS 188
           +T  P+WR   FSC   ++    SPRS
Sbjct: 117 MTFWPKWRLCSFSCACRNLKEKDSPRS 143


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 285 IRLLCVCIVSYVK-TREKETKNFASCYLWKGRCFIRPKVXASID 413
           I L+ + +V  V+ T  +  KNF    LW+G  F + K  A +D
Sbjct: 379 ILLVVMTMVLLVRFTLSRRPKNFRKWDLWQGIAFSQSKAEARVD 422


>At4g12620.1 68417.m01988 replication control protein, putative
           similar to origin recognition complex subunit 1
           (Replication control protein 1)[Homo sapiens]
           SWISS-PROT:Q13415
          Length = 813

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 269 HYTNSDKAFVCLHCQLRENTR--ERDKKLCIVLLMERAMLYTTKSRXFY 409
           H     KA  CL+ +  E  R  + D+K CI+L+ E  +L T      Y
Sbjct: 527 HRVGWKKALQCLNERFAEGKRIGKEDEKPCILLIDELDLLVTRNQSVLY 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,693
Number of Sequences: 28952
Number of extensions: 178344
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)