Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30940
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.0  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   3.0  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    22   5.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 679 SRSPAFSESKRFVPIASSSSMKMIAGAFSLANAKASRT 566
           S +PAFSE +  V     +S   +   F L+   A R+
Sbjct: 12  SSAPAFSEQRGGVISEGVASSLQVVALFQLSETTAPRS 49


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 286 AMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKF 402
           ++ V ER  E   +IGG D      +   +  M H EK+
Sbjct: 60  SVPVIERRLEVDCNIGGYDFPKDTFLSLFIYGMHHNEKY 98


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 580 KASRTSLAPSPMNICTSCGP 521
           K S+ +++ + +  C SCGP
Sbjct: 31  KRSKFAISENAVKPCVSCGP 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,722
Number of Sequences: 336
Number of extensions: 3752
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)