Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30940
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 144 1e-35
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 110 2e-25
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 104 1e-23
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 99 3e-22
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 96 5e-21
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 94 2e-20
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 81 2e-16
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 80 3e-16
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 80 3e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 73 5e-14
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 71 2e-13
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 71 2e-13
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 68 1e-12
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 64 2e-11
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 63 4e-11
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 62 7e-11
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 60 2e-10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 57 2e-09
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 50 4e-07
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 44 2e-05
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 35 0.009
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 33 0.038
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 33 0.038
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.82
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.82
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.1
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 28 1.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.4
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 1.9
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 27 1.9
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 1.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 1.9
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 2.5
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.5
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 27 3.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 3.3
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 27 3.3
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 3.3
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 26 4.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.4
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 26 5.8
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 7.6
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 144 bits (349), Expect = 1e-35
Identities = 64/86 (74%), Positives = 76/86 (88%)
Frame = +1
Query: 253 KLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKG 432
KLP+EYD+RVKAMEVDE+PTE+YSDIGGL KQI+EL EA+VLPM +KF LG+ PPKG
Sbjct: 162 KLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKG 221
Query: 433 VLLYGPPGTGKTLLARACAAQTKSTF 510
L++GPPGTGKTLLARACAAQ+ +TF
Sbjct: 222 CLMFGPPGTGKTLLARACAAQSNATF 247
Score = 111 bits (268), Expect = 7e-26
Identities = 56/62 (90%), Positives = 58/62 (93%)
Frame = +3
Query: 492 SNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 671
SN + LKLA PQLVQMFIGDGAKLVRDAFALAKEK+PAIIFIDELDAIGTKRFDSEKAG
Sbjct: 243 SNATF-LKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAG 301
Query: 672 DR 677
DR
Sbjct: 302 DR 303
Score = 107 bits (258), Expect = 1e-24
Identities = 52/85 (61%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 KIKVNKTLPYLVSNVIELLDVDPQEEE-EDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVI 178
KI NK LPYLV NV+E+LD+ P E + ++ A + ++ R GK AVIKTSTRQT FLP+I
Sbjct: 77 KISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLI 136
Query: 179 GLVDAEKLKPGDLVGVNKDSYLILE 253
GLV+ E+L PGDL+GVNKDSYLI++
Sbjct: 137 GLVEPEELHPGDLIGVNKDSYLIID 161
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 110 bits (264), Expect = 2e-25
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +1
Query: 271 DARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGP 450
D + M++D+ PTE Y+DIGGL+ QIQE+ EAV LP+TH E + +GI PPKGV+LYG
Sbjct: 174 DPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGA 233
Query: 451 PGTGKTLLARACAAQTKSTF 510
PGTGKTLLA+A A QT +TF
Sbjct: 234 PGTGKTLLAKAVANQTSATF 253
Score = 70.9 bits (166), Expect = 2e-13
Identities = 28/56 (50%), Positives = 44/56 (78%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
L++ G +L+Q ++GDG +LVR F A+E +P+I+FIDE+DAIGTKR+D++ +R
Sbjct: 254 LRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAER 309
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 104 bits (249), Expect = 1e-23
Identities = 50/100 (50%), Positives = 66/100 (66%)
Frame = +1
Query: 211 RLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTH 390
R+G + + L LP + D V M+V+E+P Y D+GG +QI+ L E V LP+
Sbjct: 143 RVGCDRNKYAIQL-PLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLS 201
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
E+FV LGI PPKG++LYGPPGTGKTL ARA A +T +TF
Sbjct: 202 PERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATF 241
Score = 62.9 bits (146), Expect = 4e-11
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 674
+++ G +LVQ ++G+GA++VR+ F +A+ K IIF DE+DAIG RFD GD
Sbjct: 242 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGD 296
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 99 bits (238), Expect = 3e-22
Identities = 45/85 (52%), Positives = 59/85 (69%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
LP E D+ + + DERP Y+D+GGLD Q QE+ EAV LP+T + + +GI PP+GV
Sbjct: 112 LPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGV 171
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
LLYGPPGTGKT+L +A A T + F
Sbjct: 172 LLYGPPGTGKTMLVKAVANSTAANF 196
Score = 74.9 bits (176), Expect = 9e-15
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +3
Query: 492 SNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 671
S +++ G + VQ ++G+G ++VRD F +A+E APAIIFIDE+DAI TKRFD++
Sbjct: 191 STAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGA 250
Query: 672 DR 677
DR
Sbjct: 251 DR 252
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 95.9 bits (228), Expect = 5e-21
Identities = 46/88 (52%), Positives = 59/88 (67%)
Frame = +1
Query: 247 LRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP 426
++ LP + D V M V++ P Y +GGL+KQI+E+ E + LP+ H E F +LGI P
Sbjct: 120 IKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQP 179
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
KG+LLYGPPGTGKTLLARA A T F
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHHTDCKF 207
Score = 64.5 bits (150), Expect = 1e-11
Identities = 25/50 (50%), Positives = 43/50 (86%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 659
++++G +LVQ +IG+G+++VR+ F +A+E AP+IIF+DE+D+IG+ R DS
Sbjct: 208 IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDS 257
Score = 28.7 bits (61), Expect = 0.82
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 47 IELLDVDPQEEEEDGAVVDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVG 223
+ LL + Q +E G+ V + GK V +K Y + + +D +++KP V
Sbjct: 52 VRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVA 111
Query: 224 VNKDSYLILESSQRSMTP 277
+ DSY +++ + P
Sbjct: 112 LRNDSYQLIKILPNKVDP 129
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 93.9 bits (223), Expect = 2e-20
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +1
Query: 247 LRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP 426
+R LP E D V M +++ ++ +GGL++QI+EL E + LP+ + E F+ +GI PP
Sbjct: 107 MRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPP 166
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
KGVLLYGPPGTGKTLLARA AA F
Sbjct: 167 KGVLLYGPPGTGKTLLARAVAASLGVNF 194
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/70 (37%), Positives = 42/70 (60%)
Frame = +3
Query: 468 IAGESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 647
+ ++ S V LK+ +V +IG+ A+++R+ F AKE P +IF+DE+DAIG +
Sbjct: 181 LLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGR 240
Query: 648 RFDSEKAGDR 677
RF + DR
Sbjct: 241 RFSEGTSADR 250
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/64 (53%), Positives = 48/64 (75%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
Y DIGG +Q+ ++ E V LP+ H + F ++GI PP+G+L+YGPPGTGKTL+ARA A +T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Query: 499 KSTF 510
+ F
Sbjct: 283 GAFF 286
Score = 78.6 bits (185), Expect = 8e-16
Identities = 36/72 (50%), Positives = 50/72 (69%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
V E P ++ DIGGL++ +EL E V +P+ + EKF+ G+ P KGVL +GPPGTGKTLL
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 475 ARACAAQTKSTF 510
A+A A + + F
Sbjct: 548 AKAIANECSANF 559
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 674
+ + GP+L+ M+ G+ VRD F A+ AP ++F+DELD+I R AGD
Sbjct: 560 ISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKAR--GASAGD 612
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 504 YILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+ + GP+++ G+ +R AF A++ +PAIIFIDE+D+I KR
Sbjct: 285 FFFLINGPEIMSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKR 333
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +1
Query: 301 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 480
E P +SDIGG ++ Q+L E+V P+TH E F LG+ PPKGVLLYGPPG KT+ A+
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600
Query: 481 ACAAQTKSTF 510
A A +T F
Sbjct: 601 AIATETGLNF 610
Score = 69.7 bits (163), Expect = 4e-13
Identities = 32/62 (51%), Positives = 42/62 (67%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+S IGGL QI ++ + V LP + E F I PP+GVLLYGPPGTGKT++ RA AA+
Sbjct: 278 FSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAAEA 337
Query: 499 KS 504
+
Sbjct: 338 NA 339
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +3
Query: 468 IAGESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 647
I +++ + + + GP+L F+G+ + VR F A++ +P++IF DE+DA+
Sbjct: 597 ITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTAN 656
Query: 648 RFDSEKAGDR 677
R + + DR
Sbjct: 657 R-GEDNSSDR 665
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 507 ILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+ + GP +V ++G+ +R F A+ P+IIFIDE+DA+ KR
Sbjct: 341 VFTIDGPSVVGKYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKR 388
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 80.2 bits (189), Expect = 3e-16
Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = +1
Query: 277 RVKAMEVDERPTE-QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
R KA E P++ SDIGGLD I EL+E V +P+ H E + GIHPP+GVLL+GPP
Sbjct: 158 RQKAEANREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPP 217
Query: 454 GTGKTLLARACA 489
G GKT+LA A A
Sbjct: 218 GCGKTMLANALA 229
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/68 (45%), Positives = 44/68 (64%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P +++IG L EL A+V P+ E + ++GI P GVLL+GPPG GKTLLA+A
Sbjct: 487 PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAV 546
Query: 487 AAQTKSTF 510
A ++K+ F
Sbjct: 547 ANESKANF 554
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +3
Query: 495 NKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 659
+K + + GP+L+ ++G+ + VR F A+ +P +IF DELDA+ +R DS
Sbjct: 550 SKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDS 604
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
V + ++ P +V G+ K VR+ F AK AP ++FIDE+DA+ KR +++ +R
Sbjct: 234 VPFISISAPSIVSGMSGESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMER 292
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 72.5 bits (170), Expect = 5e-14
Identities = 32/62 (51%), Positives = 42/62 (67%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ +GGLD I +L E V+LP+ + E F + PP+GVL +GPPGTGKTL+ARA AA
Sbjct: 265 FESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAAAC 324
Query: 499 KS 504
S
Sbjct: 325 SS 326
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 492 SNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 665
+ KV G + ++G+ + +R F AK P+IIF DE+D + R ++
Sbjct: 328 NKKVSFYMRKGADCLSKWVGEAERQLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQE 385
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/63 (52%), Positives = 45/63 (71%)
Frame = +1
Query: 304 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARA 483
R ++ IGGL+ I +L E V+LP+ + E F++L I PP+GVL +GPPGTGKTL+AR
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARV 425
Query: 484 CAA 492
AA
Sbjct: 426 LAA 428
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +3
Query: 492 SNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 665
+ K+ G + ++G+ + +R F A+ P+IIF DE+D + R ++
Sbjct: 434 NQKISFFLRKGSDCLSKWVGEAERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQE 491
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 70.5 bits (165), Expect = 2e-13
Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG--IHPPKGVLLYGPPGTGKTLLARACAA 492
+ DIGG+D+ + +L++ V+ P+ + E F G + PKG+LLYGPPG GKT+LA+A A
Sbjct: 88 FDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAK 147
Query: 493 QTKSTF 510
Q+++TF
Sbjct: 148 QSQATF 153
Score = 35.1 bits (77), Expect = 0.009
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
L + G+ KLV F LA++ P IIFIDE+D +R
Sbjct: 161 LTDKWFGESNKLVDALFTLARKLEPTIIFIDEIDTFLRQR 200
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 67.7 bits (158), Expect = 1e-12
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+SDI GLD L EAV+ P E F L P +G+LL+GPPGTGKT+LARA A +
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVATEA 436
Query: 499 KSTF 510
K+TF
Sbjct: 437 KATF 440
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 498 KVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 659
K ++ L ++GD KLVR F +AK + ++IF+DE+D+I + R DS
Sbjct: 437 KATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEIDSILSARNDS 490
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 64.1 bits (149), Expect = 2e-11
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = +1
Query: 301 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 480
E+P ++ DI GL+ + L E V+LP+ + F + G P G+LLYGPPGTGK+ LA+
Sbjct: 122 EKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPGTGKSYLAK 180
Query: 481 ACAAQTKSTF 510
A A + STF
Sbjct: 181 AVATEAGSTF 190
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
++ LV ++G+ +LVR F +A+E+ P+IIFIDE+D++ R + E R
Sbjct: 193 ISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSR 246
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 62.9 bits (146), Expect = 4e-11
Identities = 32/68 (47%), Positives = 42/68 (61%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P + DIGGL++ L + + LP+ E F + G+ P GVLLYGPPGTGKTLLA+A
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF-SQGLKPRSGVLLYGPPGTGKTLLAKAV 708
Query: 487 AAQTKSTF 510
A + F
Sbjct: 709 ATELSLEF 716
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/55 (36%), Positives = 35/55 (63%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 674
+ + GP+L+ M++G+ VR+ F A+ +P +IF DELD+I R +S +G+
Sbjct: 717 VSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGN 771
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 62.1 bits (144), Expect = 7e-11
Identities = 31/64 (48%), Positives = 41/64 (64%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ DI GL+ L EAVV P + F L P +G+LL+GPPGTGKT+LARA A ++
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQGLR-EPARGMLLFGPPGTGKTMLARAVATES 516
Query: 499 KSTF 510
+S F
Sbjct: 517 RSVF 520
Score = 45.2 bits (102), Expect = 9e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
++ L F+G+ KLVR F LAK+ +P+IIF+DE+D++ + R
Sbjct: 523 ISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR 567
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 60.5 bits (140), Expect = 2e-10
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
++G Q +M++G GAK VR+ FA A+++AP+IIFIDELDAIG KR
Sbjct: 331 MSGSQFDEMYVGVGAKRVRELFAAARKQAPSIIFIDELDAIGQKR 375
Score = 57.2 bits (132), Expect = 2e-09
Identities = 30/65 (46%), Positives = 41/65 (63%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 495
++SD+ G+D+ +EL E +V + F LG P+GVLL GPPGTGKT+LARA A +
Sbjct: 265 RFSDVQGVDEAKEEL-EEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE 323
Query: 496 TKSTF 510
F
Sbjct: 324 ANVPF 328
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/50 (52%), Positives = 35/50 (70%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V L ++G + ++MF+G G VRD FA A++ AP IIFIDE+DAIG R
Sbjct: 355 VPFLSVSGSEFLEMFVGVGPSRVRDLFATARKNAPCIIFIDEIDAIGKAR 404
Score = 54.4 bits (125), Expect = 1e-08
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 495
+++D+ G+D+ +E++E V + + + + LG P+G +L GPPGTGKTLLA+A A +
Sbjct: 294 KFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGE 352
Query: 496 TKSTF 510
F
Sbjct: 353 ANVPF 357
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 328 IGGLDKQIQELIEAVVLPMTHKEKFVN-LGIHPPKGVLLYGPPGTGKTLLAR 480
IGGLD + + V LGI+ KG+LLYGPPGTGKTL+AR
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIAR 322
Score = 29.5 bits (63), Expect = 0.47
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +3
Query: 522 GPQLVQMFIGDGAKLVRDAFALA--------KEKAPAIIFIDELDAIGTKRFDS 659
GP+++ ++G + VR FA A +E II DELDAI KR S
Sbjct: 338 GPEILNKYVGQSEENVRKLFADAEREYRDRGEESGLHIIIFDELDAICKKRGSS 391
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR-FDSEKAGDR 677
V + + GP+L+ +IG + VRD F+ A+ P ++F DE D++ +R DS DR
Sbjct: 666 VQFISIKGPELLDKYIGKSEQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDR 725
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/59 (28%), Positives = 33/59 (55%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAA 492
++ DI G+ + + + + + P+ + + + P G+LL+G PG GKT LA A ++
Sbjct: 604 RWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAISS 662
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 35.1 bits (77), Expect = 0.009
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +1
Query: 283 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLP---MTHKEKFVNLGIHPPKGVLLYGPP 453
+AM++D P S + ++K +E VV ++ EKF++ P +L YGPP
Sbjct: 9 RAMDID-LPLGSESTLPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPH--MLFYGPP 65
Query: 454 GTGKTLLARACA 489
GTGKT ACA
Sbjct: 66 GTGKTSTILACA 77
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 412 GIHPPKGVLLYGPPGTGKTLLARACAAQ 495
GI +G LLYGPPG+GKT A A +
Sbjct: 238 GIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACAAQTKSTF 510
++L+G GTGKT LAR A TKS F
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTKSRF 148
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 421 PPKGVLLYGPPGTGKTLLARACAA 492
P L GP GTGKTLL +A A+
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALAS 636
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.7 bits (61), Expect = 0.82
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 409 LGIHPPKGVLLYGPPGTGKTLLARACA 489
LG++ K VLL GPPG GKT A A
Sbjct: 406 LGLY--KAVLLSGPPGIGKTTAAHLVA 430
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 530 LWTSQLQNVDFV*AAQALASNVFPVPGGP 444
LW + + V A QA S VFP+PG P
Sbjct: 134 LWDIKPPGYELVTADQAKMSGVFPLPGAP 162
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACAAQ 495
KGVL G GTGKT LA A A +
Sbjct: 65 KGVLFAGGAGTGKTALALAIAQE 87
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACAAQT 498
K +LL G PG GKT L A A +T
Sbjct: 1560 KPILLEGSPGVGKTSLITALARET 1583
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 421 PPKGVLLYGPPGTGKTLLARA 483
PP V + GPPGTGK+ L ++
Sbjct: 73 PPVIVAVMGPPGTGKSTLIKS 93
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 397 KFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K + G + +L+ GPP TGKT +A A
Sbjct: 56 KMIQEGRIAGRAILMAGPPSTGKTAIAMGMA 86
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 397 KFVNLGIHPPKGVLLYGPPGTGKTLL 474
+F+N + + V+ GPPG+GK++L
Sbjct: 2504 EFLNFSLTKNRCVIFCGPPGSGKSML 2529
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKT 468
++K V I + L++GPPGTGKT
Sbjct: 214 QKKAVKFSIAVKELSLIHGPPGTGKT 239
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 424 PKGVLLYGPPGTGKTLL 474
PKG+ LYG G GKT L
Sbjct: 118 PKGIYLYGDVGCGKTAL 134
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 229 VDSY--QVSWFEFLCIYQADDG 170
VD+Y SW+E LC Y A+DG
Sbjct: 75 VDNYILSYSWYERLCSYLAEDG 96
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 1.9
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Frame = -3
Query: 548 NEHLHKLWTSQLQNVDFV*AAQALASNVFPVPGG-PYKRTPLGGWMP-----RFTNFSLC 387
+++L +T+ L N+ + + A+N P+ PY TP G P +F++ +
Sbjct: 262 HQYLQNYYTASLTNIPTI--SNVNATNFHPLHSQQPYVDTP-GIDAPSDLEAKFSDLGVS 318
Query: 386 VIGNTTASINSCICLSRPPISEYCSVGLSSTSIAFTLASYSAGSFLRSNK 237
+ + T+ + SC PP+S S S S+ + L NK
Sbjct: 319 SVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGIKSAKSLGLNK 368
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACAAQTK 501
+++ G PGTGKT LA A T+
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 81 KKTAPLSI*THSVKGNAL*SRLQPGKHISCPSSAW 185
+K AP + TH K N+L S +P S S +W
Sbjct: 352 RKLAPPFLRTHKAKSNSLFSMKRPSSSSSSLSGSW 386
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 145 FNPANIFLARHRLGRCRETQTRRLGRSQQRLLFD 246
F+ +FL R CR+ RR +++Q LL++
Sbjct: 298 FHKLRLFLMERRYYYCRQRSVRRKEKTRQLLLYE 331
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.3
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 673 SPAFSESKRFVPIASSSSMKMIAGAFSLANAKASRTSLAPSPMNICTSCGPAS 515
S S S I SSS + SLA++ + +SLA S N TS P S
Sbjct: 122 SSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTS 174
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 202 QTRRLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQY 321
QT R+G R L L K P E D + + + + P E+Y
Sbjct: 253 QTFRIGTVCARPLSGLNKHPHEIDVKFEDISISLDPREEY 292
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 289 MEVDERPTEQYSDIGGLDKQIQELIEAV 372
M V+ PT ++S +G K IQE+IEA+
Sbjct: 198 MGVESVPTCRHSKLGEPSKTIQEVIEAL 225
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 56 LDVDPQEEEEDGAVVDLDSQRKGKCAVIKTST 151
++VD +EEED V D D VI ST
Sbjct: 250 VEVDDDDEEEDEVVTDDDGTSNADSEVITAST 281
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 382 LATLQLQLIPVSVYPDLQYLSIVQLVSHLPPLPL---LWRH 269
L + L +P++ + Q S + +SHLP +PL LW H
Sbjct: 642 LCEICLADVPLTFFEHQQKNSYLDAISHLPFIPLNSCLWLH 682
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 403 VNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF*SWLVHNLCRCSL 549
+N G+ V L GP G GKT L + + + + S + H+ R +L
Sbjct: 613 LNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRHHGLRLAL 661
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 187 RCRETQTRRLGRSQQRLLFD-LRKLPAEYDARVKAMEVDERPTEQYSDIGGLD 342
+C+ TR L +++ FD + K P D++ K D+ +QYS+ LD
Sbjct: 79 KCKLIYTRTLRKNE----FDGIHKFPDLEDSKQKLQVADDEENKQYSESSLLD 127
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
K + L GPPG GKT + ++ A+ F
Sbjct: 572 KIMCLVGPPGVGKTSVGKSIASALNREF 599
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 436 LLYGPPGTGKTL 471
L+ GPPGTGKT+
Sbjct: 411 LIQGPPGTGKTV 422
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,495
Number of Sequences: 5004
Number of extensions: 63799
Number of successful extensions: 308
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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