Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30940
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.66 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.88 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.88 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 128 CAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVN---KDSYLILESSQRSMTPE*RQWR* 298
           C V+  ST   Y + V+GL  A    P D++ +      S ++L  S  S+T    +++ 
Sbjct: 154 CVVLACSTATVYVMSVVGLSKAPAQIPVDVLVLTVTLSASAMVLGLSSYSLT----EFQQ 209

Query: 299 MRDQLNNTQILEV 337
            R  L   Q LEV
Sbjct: 210 RRAFLETRQSLEV 222


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 451 EVHIKELLWVGGCRDSQISPC 389
           ++  +EL+W  G +D  IS C
Sbjct: 429 DIRTEELIWARGTKDIPISAC 449


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 451 EVHIKELLWVGGCRDSQISPC 389
           ++  +EL+W  G +D  IS C
Sbjct: 519 DIRTEELIWARGTKDIPISAC 539


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 228 LTPTKSPGLSFSASTKPMTGK 166
           L+   S GLS S STKP T K
Sbjct: 538 LSENLSSGLSISDSTKPETSK 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,557
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)