Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30940
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 158 3e-39
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 158 3e-39
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 107 5e-24
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 107 5e-24
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 107 7e-24
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 107 9e-24
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 101 4e-22
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 101 6e-22
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 101 6e-22
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 93 2e-19
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 93 2e-19
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 83 2e-16
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 83 2e-16
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 82 3e-16
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 73 2e-13
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 71 9e-13
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 71 9e-13
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 68 5e-12
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 68 5e-12
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 66 2e-11
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 66 2e-11
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 66 3e-11
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 66 3e-11
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 65 4e-11
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 65 4e-11
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 65 5e-11
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 65 5e-11
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 64 8e-11
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 64 8e-11
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 63 1e-10
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 63 1e-10
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 62 2e-10
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 62 4e-10
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 62 4e-10
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 62 4e-10
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 60 1e-09
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 60 1e-09
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 60 1e-09
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 60 1e-09
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 60 2e-09
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 60 2e-09
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 60 2e-09
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 60 2e-09
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 59 2e-09
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 59 2e-09
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 59 3e-09
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 58 4e-09
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 58 4e-09
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 58 5e-09
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 58 7e-09
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 56 3e-08
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 50 2e-06
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 47 1e-05
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 46 2e-05
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 43 2e-04
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 41 7e-04
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 39 0.003
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 39 0.003
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 39 0.003
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 37 0.011
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 37 0.011
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 37 0.011
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 37 0.011
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 37 0.014
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 36 0.019
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 36 0.019
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 36 0.025
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 36 0.033
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 36 0.033
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 36 0.033
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 36 0.033
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 35 0.043
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 35 0.043
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 35 0.057
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 35 0.057
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 34 0.099
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 34 0.099
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 34 0.099
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 33 0.17
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 33 0.17
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 33 0.23
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.23
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 33 0.23
At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR... 33 0.23
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 32 0.30
At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C... 32 0.30
At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C... 32 0.30
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 32 0.30
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 32 0.30
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 32 0.30
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast... 32 0.40
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 32 0.40
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 32 0.40
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 32 0.40
At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic... 31 0.53
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 31 0.53
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 31 0.53
At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS cla... 31 0.53
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 31 0.70
At4g28070.1 68417.m04026 AFG1-like ATPase family protein contain... 31 0.70
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 31 0.93
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 31 0.93
At3g03250.1 68416.m00321 UTP--glucose-1-phosphate uridylyltransf... 31 0.93
At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.93
At2g25070.1 68415.m02999 protein phosphatase 2C, putative / PP2C... 31 0.93
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 30 1.2
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 30 1.2
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 30 1.2
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR... 30 1.2
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 30 1.6
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 30 1.6
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 30 1.6
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 30 1.6
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 30 1.6
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 30 1.6
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 30 1.6
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 30 1.6
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 30 1.6
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 29 2.1
At4g30490.1 68417.m04329 AFG1-like ATPase family protein contain... 29 2.1
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 29 2.1
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 29 2.1
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 29 2.1
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 2.1
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 29 2.1
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 29 2.1
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 29 2.8
At5g52860.1 68418.m06561 ABC transporter family protein 29 2.8
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 29 2.8
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 29 2.8
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 29 2.8
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 29 2.8
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 29 2.8
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 2.8
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi... 29 2.8
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 29 3.7
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 29 3.7
At1g61420.1 68414.m06921 S-locus lectin protein kinase family pr... 29 3.7
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 29 3.7
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 28 4.9
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf... 28 4.9
At5g17310.1 68418.m02027 UTP--glucose-1-phosphate uridylyltransf... 28 4.9
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 28 4.9
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi... 28 4.9
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 28 4.9
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 28 4.9
At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR... 28 4.9
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 28 4.9
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 28 6.5
At3g58120.1 68416.m06481 bZIP transcription factor family protei... 28 6.5
At3g09240.1 68416.m01098 protein kinase-related low similarity t... 28 6.5
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 28 6.5
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 28 6.5
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 28 6.5
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 28 6.5
At5g60370.1 68418.m07570 expressed protein predicted protein, Ar... 27 8.6
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR... 27 8.6
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 27 8.6
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 27 8.6
At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS cla... 27 8.6
At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS cla... 27 8.6
At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS cla... 27 8.6
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain... 27 8.6
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 27 8.6
At1g31770.1 68414.m03899 ABC transporter family protein contains... 27 8.6
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 158 bits (384), Expect = 3e-39
Identities = 70/88 (79%), Positives = 81/88 (92%)
Frame = +1
Query: 247 LRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP 426
L LP+EYD+RVKAMEVDE+PTE Y+DIGGL+KQIQEL+EA+VLPMTHKE+F LG+ PP
Sbjct: 146 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPP 205
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
KGVLLYGPPGTGKTL+ARACAAQT +TF
Sbjct: 206 KGVLLYGPPGTGKTLMARACAAQTNATF 233
Score = 138 bits (334), Expect = 3e-33
Identities = 62/86 (72%), Positives = 78/86 (90%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 KIKVNKTLPYLVSNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVI 178
KIK+NK LPYLV N++E+L+++P+++ EEDGA +DLDSQRKGKC V+KTSTRQT FLPV+
Sbjct: 63 KIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVV 122
Query: 179 GLVDAEKLKPGDLVGVNKDSYLILES 256
GLVD + LKPGDLVGVNKDSYLIL++
Sbjct: 123 GLVDPDSLKPGDLVGVNKDSYLILDT 148
Score = 106 bits (255), Expect = 1e-23
Identities = 51/56 (91%), Positives = 53/56 (94%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
LKLAGPQLVQMFIGDGAKLVRDAF LAKEKAP IIFIDE+DAIGTKRFDSE +GDR
Sbjct: 234 LKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDR 289
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 158 bits (384), Expect = 3e-39
Identities = 71/88 (80%), Positives = 81/88 (92%)
Frame = +1
Query: 247 LRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP 426
L LP+EYD+RVKAMEVDE+PTE Y+DIGGL+KQIQEL+EA+VLPMTHKE+F LGI PP
Sbjct: 145 LDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPP 204
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
KGVLLYGPPGTGKTL+ARACAAQT +TF
Sbjct: 205 KGVLLYGPPGTGKTLMARACAAQTNATF 232
Score = 137 bits (332), Expect = 5e-33
Identities = 62/86 (72%), Positives = 77/86 (89%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 KIKVNKTLPYLVSNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVI 178
KIK+NK LPYLV N++E+L++ P+++ EEDGA +DLDSQRKGKC V+KTSTRQT FLPV+
Sbjct: 62 KIKLNKQLPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVV 121
Query: 179 GLVDAEKLKPGDLVGVNKDSYLILES 256
GLVD + LKPGDLVGVNKDSYLIL++
Sbjct: 122 GLVDPDTLKPGDLVGVNKDSYLILDT 147
Score = 105 bits (252), Expect = 3e-23
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
LKLAGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDR
Sbjct: 233 LKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDR 288
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 107 bits (258), Expect = 5e-24
Identities = 50/85 (58%), Positives = 63/85 (74%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
L E D V M+V++ P E Y+DIGGL+ QIQE+ EAV LP+TH E + ++GI PPKGV
Sbjct: 166 LQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGV 225
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
+LYG PGTGKTLLA+A A T +TF
Sbjct: 226 ILYGEPGTGKTLLAKAVANSTSATF 250
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/62 (46%), Positives = 46/62 (74%)
Frame = +3
Query: 492 SNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 671
S L++ G +L+Q ++GDG KLVR+ F +A + +P+I+FIDE+DA+GTKR+D+ G
Sbjct: 245 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGG 304
Query: 672 DR 677
+R
Sbjct: 305 ER 306
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 107 bits (258), Expect = 5e-24
Identities = 50/85 (58%), Positives = 63/85 (74%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
L E D V M+V++ P E Y+DIGGL+ QIQE+ EAV LP+TH E + ++GI PPKGV
Sbjct: 166 LQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGV 225
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
+LYG PGTGKTLLA+A A T +TF
Sbjct: 226 ILYGEPGTGKTLLAKAVANSTSATF 250
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/62 (46%), Positives = 46/62 (74%)
Frame = +3
Query: 492 SNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 671
S L++ G +L+Q ++GDG KLVR+ F +A + +P+I+FIDE+DA+GTKR+D+ G
Sbjct: 245 STSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGG 304
Query: 672 DR 677
+R
Sbjct: 305 ER 306
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 107 bits (257), Expect = 7e-24
Identities = 53/100 (53%), Positives = 68/100 (68%)
Frame = +1
Query: 211 RLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTH 390
R+G Q++ + LP + D V M V+E+P YSDIGG +QI+++ E V LPM H
Sbjct: 169 RVGVDQKKYQIQI-PLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLH 227
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
EKFV LGI PPKGVL YGPPG+GKTL+ARA A +T + F
Sbjct: 228 PEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACF 267
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 674
+++ G +LVQ +IG+GA++VR+ F +A+ K I+F DE+DAIG RFD D
Sbjct: 268 IRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSD 322
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 107 bits (256), Expect = 9e-24
Identities = 50/85 (58%), Positives = 61/85 (71%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
LP + D V M V+E+P Y+D+GG +QI+++ E V LPM H EKFV LGI PPKGV
Sbjct: 146 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGV 205
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
L YGPPGTGKTLLARA A +T + F
Sbjct: 206 LCYGPPGTGKTLLARAVANRTDACF 230
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/55 (45%), Positives = 39/55 (70%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 674
+++ G +LVQ ++G+GA++VR+ F +A+ K I+F DE+DAIG RFD GD
Sbjct: 231 IRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGD 285
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 101 bits (242), Expect = 4e-22
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
LP E D+ + + E+P Y+DIGG D Q QE+ EAV LP+TH E + +GI PP+GV
Sbjct: 133 LPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGV 192
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
LLYGPPGTGKT+LA+A A T + F
Sbjct: 193 LLYGPPGTGKTMLAKAVANHTTAAF 217
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
+++ G + VQ ++G+G ++VRD F LAKE APAIIFIDE+DAI T RFD++ DR
Sbjct: 218 IRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADR 273
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 101 bits (241), Expect = 6e-22
Identities = 49/85 (57%), Positives = 60/85 (70%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
LP++ D V M+V++ P Y IGGLD+QI+E+ E + LP+ H E F +LGI PKGV
Sbjct: 139 LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGV 198
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
LLYGPPGTGKTLLARA A T TF
Sbjct: 199 LLYGPPGTGKTLLARAVAHHTDCTF 223
Score = 63.3 bits (147), Expect = 1e-10
Identities = 24/50 (48%), Positives = 43/50 (86%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 659
++++G +LVQ +IG+G+++VR+ F +A+E AP+IIF+DE+D+IG+ R +S
Sbjct: 224 IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 101 bits (241), Expect = 6e-22
Identities = 49/85 (57%), Positives = 60/85 (70%)
Frame = +1
Query: 256 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
LP++ D V M+V++ P Y IGGLD+QI+E+ E + LP+ H E F +LGI PKGV
Sbjct: 139 LPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGV 198
Query: 436 LLYGPPGTGKTLLARACAAQTKSTF 510
LLYGPPGTGKTLLARA A T TF
Sbjct: 199 LLYGPPGTGKTLLARAVAHHTDCTF 223
Score = 63.3 bits (147), Expect = 1e-10
Identities = 24/50 (48%), Positives = 43/50 (86%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 659
++++G +LVQ +IG+G+++VR+ F +A+E AP+IIF+DE+D+IG+ R +S
Sbjct: 224 IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMES 273
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 92.7 bits (220), Expect = 2e-19
Identities = 46/88 (52%), Positives = 59/88 (67%)
Frame = +1
Query: 247 LRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP 426
+R LP E D V M ++ YS +GGL QI+EL E++ LP+ + E F+ +GI PP
Sbjct: 114 MRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPP 173
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
KGVLLYGPPGTGKTLLARA A+ + F
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDANF 201
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
LK+ ++ +IG+ A+L+R+ F A+E P IIF+DE+DAIG +RF + DR
Sbjct: 202 LKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADR 257
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 92.7 bits (220), Expect = 2e-19
Identities = 46/88 (52%), Positives = 59/88 (67%)
Frame = +1
Query: 247 LRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP 426
+R LP E D V M ++ YS +GGL QI+EL E++ LP+ + E F+ +GI PP
Sbjct: 114 MRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPP 173
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
KGVLLYGPPGTGKTLLARA A+ + F
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNIDANF 201
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 677
LK+ ++ +IG+ A+L+R+ F A+E P IIF+DE+DAIG +RF + DR
Sbjct: 202 LKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADR 257
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/74 (51%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +1
Query: 292 EVDERPTEQ-YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKT 468
E +ER E Y D+GG+ KQ+ ++ E V LP+ H + F ++G+ PPKG+LLYGPPG+GKT
Sbjct: 196 EDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 255
Query: 469 LLARACAAQTKSTF 510
L+ARA A +T + F
Sbjct: 256 LIARAVANETGAFF 269
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/72 (51%), Positives = 46/72 (63%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
V E P + DIGGL+ +EL E V P+ H EKF G+ P KGVL YGPPG GKTLL
Sbjct: 471 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 530
Query: 475 ARACAAQTKSTF 510
A+A A + ++ F
Sbjct: 531 AKAIANECQANF 542
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 674
+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I T+R +S AGD
Sbjct: 543 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNS--AGD 595
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +3
Query: 522 GPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
GP+++ G+ +R AF A++ AP+IIFIDE+D+I KR
Sbjct: 274 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 316
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/74 (51%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +1
Query: 292 EVDERPTEQ-YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKT 468
E +ER E Y D+GG+ KQ+ ++ E V LP+ H + F ++G+ PPKG+LLYGPPG+GKT
Sbjct: 197 EDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT 256
Query: 469 LLARACAAQTKSTF 510
L+ARA A +T + F
Sbjct: 257 LIARAVANETGAFF 270
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/72 (51%), Positives = 46/72 (63%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
V E P + DIGGL+ +EL E V P+ H EKF G+ P KGVL YGPPG GKTLL
Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531
Query: 475 ARACAAQTKSTF 510
A+A A + ++ F
Sbjct: 532 AKAIANECQANF 543
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 659
+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I T+R +S
Sbjct: 544 ISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNS 593
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +3
Query: 522 GPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
GP+++ G+ +R AF A++ AP+IIFIDE+D+I KR
Sbjct: 275 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 317
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 82.2 bits (194), Expect = 3e-16
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
Y D+GG+ KQ+ ++ E V LP+ H + F ++G+ PPKG+LLYGPPG+GKTL+ARA A +T
Sbjct: 206 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 265
Query: 499 KSTF 510
+ F
Sbjct: 266 GAFF 269
Score = 77.4 bits (182), Expect = 8e-15
Identities = 37/72 (51%), Positives = 47/72 (65%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
V E P ++DIGGL+ +EL E V P+ H EKF G+ P KGVL YGPPG GKTLL
Sbjct: 471 VVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 530
Query: 475 ARACAAQTKSTF 510
A+A A + ++ F
Sbjct: 531 AKAIANECQANF 542
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I T+R
Sbjct: 543 ISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 589
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +3
Query: 522 GPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
GP+++ G+ +R AF A++ AP+IIFIDE+D+I KR
Sbjct: 274 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 316
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = +1
Query: 190 CRETQTRRLGRSQQRLLFDLRKLPAEYDARVKAME--VDERPTEQYSDIGGLDKQIQELI 363
C E R+ G + F+ + A+ R AM + E P + D+GG ++ +L+
Sbjct: 679 CSEQMLRKQGEHTLSVGFEDFE-NAKTKIRPSAMREVILEVPKVNWEDVGGQNEVKNQLM 737
Query: 364 EAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
EAV P H++ F +G PP G+L++GPPG KTL+ARA A++ K F
Sbjct: 738 EAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNF 786
Score = 54.0 bits (124), Expect = 9e-08
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +1
Query: 280 VKAMEVDERPTE--QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
V+ ++ DE + S +GGL K+ ++ ++ + K +LG+ P KGVL++GPP
Sbjct: 369 VQGLQFDEGENVGCEISKLGGLSKEYA-ILRDIIDSSSIKNSLSSLGLRPTKGVLIHGPP 427
Query: 454 GTGKTLLARACAAQTKSTF 510
GTGKT LAR A + F
Sbjct: 428 GTGKTSLARTFARHSGVNF 446
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +3
Query: 498 KVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
K+ L + GP+L ++G+ K VR FA A+ AP+IIF DE+D++ + R
Sbjct: 783 KLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASIR 833
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V + GP+++ ++G+ K + + F A PA++FID+LDAI R
Sbjct: 444 VNFFSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPAR 493
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 70.5 bits (165), Expect = 9e-13
Identities = 31/72 (43%), Positives = 50/72 (69%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
VD P+ ++ D+ GL+ Q L+E V+LP ++ F L P +G+LL+GPPG GKT+L
Sbjct: 207 VDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTML 265
Query: 475 ARACAAQTKSTF 510
A+A A+++++TF
Sbjct: 266 AKAVASESQATF 277
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +3
Query: 477 ESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFD 656
+++ ++ ++ L ++G+ KLV+ F +A + P++IF+DE+D+I + R
Sbjct: 267 KAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAISRQPSVIFMDEIDSIMSTRST 326
Query: 657 SEKAGDR 677
SE R
Sbjct: 327 SENEASR 333
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 70.5 bits (165), Expect = 9e-13
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
A ++ ++++E + DIGGL + I +L E V P+ + E F + I PP+GVLL GPP
Sbjct: 367 ADIQPLQINE--DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPP 424
Query: 454 GTGKTLLAR--ACAA 492
GTGKTL+AR ACAA
Sbjct: 425 GTGKTLIARALACAA 439
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 468 IAGESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 647
+A + + KV G ++ ++G+ + ++ F A+ P+IIF DE+D +
Sbjct: 435 LACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPV 494
Query: 648 RFDSEK 665
R ++
Sbjct: 495 RSSKQE 500
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 68.1 bits (159), Expect = 5e-12
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFV-NLGIHPPKGVLLYGPPGTGKTLLARACAA 492
++ IGGL+ Q L E V+LP+ E F + P KGVLLYGPPGTGKT+LA+A A
Sbjct: 85 EFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIAR 144
Query: 493 QTKSTF*SWLVHNL 534
++++ F + V NL
Sbjct: 145 ESEAVFINVKVSNL 158
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGTKRFDSEKA 668
L+ + GD KLV F+LA + PAIIFIDE+D+ +G +R +A
Sbjct: 158 LMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDNEA 204
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = +1
Query: 286 AMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGK 465
A+ + P ++ D+GGL+ +++ V LP+ HK+ F + G+ GVLLYGPPGTGK
Sbjct: 646 ALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLYGPPGTGK 704
Query: 466 TLLARACAAQTKSTF 510
TLLA+A A + F
Sbjct: 705 TLLAKAVATECSLNF 719
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 671
L + GP+L+ M+IG+ K VRD F A+ P +IF DELD++ R S +G
Sbjct: 720 LSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASGDSG 773
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFV-NLGIHPPKGVLLYGPPGTGKTLLARACAA 492
++ IGGL+ Q L E V+LP+ E F + P KGVLLYGPPGTGKT+LA+A A
Sbjct: 82 EFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIAK 141
Query: 493 QTKSTF*SWLVHNL 534
++ + F + V NL
Sbjct: 142 ESGAVFINVRVSNL 155
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGTKRFDSEKA 668
L+ + GD KLV F+LA + PAIIFIDE+++ +G +R +A
Sbjct: 155 LMSKWFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRSTDHEA 201
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/72 (47%), Positives = 47/72 (65%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
+D P ++ D+ GL + + L EAVVLP+ E F + P KGVL++GPPGTGKTLL
Sbjct: 230 LDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMFGPPGTGKTLL 288
Query: 475 ARACAAQTKSTF 510
A+A A + +TF
Sbjct: 289 AKAVATECGTTF 300
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
L + G+ ++VR F LA+ AP+ IFIDE+D++ R
Sbjct: 308 LASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR 347
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Frame = +1
Query: 187 RCRETQTRRLGRSQQRLLFDLRKLPAEYDAR-VKAMEVDERPTEQYSDIGGLDKQIQELI 363
+ +E +R+ ++ +R LF E++ V A+ ++ DIG L+ + L
Sbjct: 104 KAQEDISRKPTQNLKRFLFLQNIAKDEFETNFVSAVVAPGEIGVKFDDIGALEHVKKTLN 163
Query: 364 EAVVLPMTHKEKFV--NLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
E V+LPM E F NL + P KG+LL+GPPGTGKTLLA+A A + + F
Sbjct: 164 ELVILPMRRPELFTRGNL-LRPCKGILLFGPPGTGKTLLAKALATEAGANF 213
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 638
+ + G L + GD KL + F+ A + AP IIF+DE+D++
Sbjct: 214 ISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 256
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 65.7 bits (153), Expect = 3e-11
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Frame = +1
Query: 190 CRETQTRRLGRSQQRLLF---DLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQEL 360
CRE RS L+ D + + + E P + D+GGL ++L
Sbjct: 239 CREATISASKRSSDSLILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKL 298
Query: 361 IEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
+AV P+ H FV +GI P +G+LL+GPPG KT LA+A A +++F
Sbjct: 299 QQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASF 348
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +1
Query: 322 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARA 483
++IGG ++ +Q L E ++ P + + LG+ P+G+LLYGPPGTGKT L RA
Sbjct: 22 AEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRA 75
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 668
L+ +L M++G+G L+R+ F A+ +P+IIF DE D + KR D +
Sbjct: 351 LSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSS 401
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +3
Query: 504 YILKLAGPQLVQMFIGDGAKLVRDAFALAKEKA----PAIIFIDELDAIGTKRFDSEKAG 671
+++ L+ + + G+ K++R+AFA A A P++IFIDE+D + +R D+ +
Sbjct: 83 HLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRR-DARREQ 141
Query: 672 D 674
D
Sbjct: 142 D 142
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = +1
Query: 310 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
T ++D+ G+D+ +EL E +V + + EK+V LG PP+GVLL G PGTGKTLLA+A A
Sbjct: 321 TITFADVAGVDEAKEEL-EEIVEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVA 379
Query: 490 AQTKSTF 510
+ + F
Sbjct: 380 GEAEVPF 386
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +3
Query: 498 KVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+V + + + V++++G GA VRD FA AK++AP+IIFIDE+DA+ R
Sbjct: 383 EVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKSR 433
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 65.3 bits (152), Expect = 4e-11
Identities = 37/99 (37%), Positives = 57/99 (57%)
Frame = +1
Query: 187 RCRETQTRRLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIE 366
+C E + L R +RL DL ++ EY + + E + + GL+ Q + E
Sbjct: 677 KCGEDE-EFLKRESKRLHRDLLRVAPEYIGGSDSES--GKAFEGWDSVAGLEGVTQCMKE 733
Query: 367 AVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARA 483
V++P+ + E F NLG+ PP+G+LL+G PGTGKTL+ RA
Sbjct: 734 VVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRA 772
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 468 IAGESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 647
+ G R + ++ G + ++GD + +R F +A++ P+IIF DE+D + K
Sbjct: 773 LIGSLARGNRRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPK 832
Query: 648 R 650
R
Sbjct: 833 R 833
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
+R K + +E+ + D G + I+ ++ +V + + E+F N GI+ PKGVLL+GPP
Sbjct: 300 SRAKFISAEEKTGVTFDDFAG-QEYIKRELQEIVRILKNDEEFQNKGIYCPKGVLLHGPP 358
Query: 454 GTGKTLLARACAAQTKSTF 510
GTGKTLLA+A A + F
Sbjct: 359 GTGKTLLAKAIAGEAGLPF 377
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +3
Query: 522 GPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
G V+MF+G A V+D FA ++ AP+IIFIDE+DAIG+KR
Sbjct: 382 GTDFVEMFVGVAASRVKDLFASSRSYAPSIIFIDEIDAIGSKR 424
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
V E+P ++SD+ GL+ Q L EAV+LP+ + F P + LLYGPPGTGK+ L
Sbjct: 123 VREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYL 181
Query: 475 ARACAAQTKSTF 510
A+A A + STF
Sbjct: 182 AKAVATEADSTF 193
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI-GTKRFDSEKAGDR 677
++ LV ++G+ KLV + F +A+E AP+IIF+DE+D++ GT+ +E R
Sbjct: 196 VSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASR 250
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 64.1 bits (149), Expect = 8e-11
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 265 EYDARVKAMEVD-ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLL 441
E++ R++ + E + DIG LD+ + L E V+LP+ + F + P +G+LL
Sbjct: 501 EFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILL 560
Query: 442 YGPPGTGKTLLARACAAQTKSTF 510
+GPPGTGKT+LA+A A + ++F
Sbjct: 561 FGPPGTGKTMLAKAIAKEAGASF 583
Score = 33.9 bits (74), Expect = 0.099
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 638
+ + G+ K VR F LA + +P IIF+DE+D++
Sbjct: 591 ITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSM 626
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 64.1 bits (149), Expect = 8e-11
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 265 EYDARVKAMEVD-ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLL 441
E++ R++ + E + DIG LD+ + L E V+LP+ + F + P +G+LL
Sbjct: 496 EFEKRIRPEVIPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILL 555
Query: 442 YGPPGTGKTLLARACAAQTKSTF 510
+GPPGTGKT+LA+A A + ++F
Sbjct: 556 FGPPGTGKTMLAKAIAKEAGASF 578
Score = 33.9 bits (74), Expect = 0.099
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 638
+ + G+ K VR F LA + +P IIF+DE+D++
Sbjct: 586 ITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSM 621
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/74 (39%), Positives = 42/74 (56%)
Frame = +1
Query: 289 MEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKT 468
+EV+ + D GG+ K + EL V+ P+ + E F +G+ PP G+L +GPPG GKT
Sbjct: 222 LEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKT 281
Query: 469 LLARACAAQTKSTF 510
LA A A + F
Sbjct: 282 KLANAIANEAGVPF 295
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P ++ D+GGLD + +V P+ + + G+ G LLYGPPG GKTL+A+A
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582
Query: 487 AAQTKSTF 510
A + + F
Sbjct: 583 ANEAGANF 590
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/51 (35%), Positives = 34/51 (66%)
Frame = +3
Query: 513 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 665
K++ +++ G + +R+ F+ A AP+I+FIDE+DAIG+KR + ++
Sbjct: 297 KISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQR 347
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+ + G +L+ ++G+ +R F A+ AP +IF DE+DA+ T R
Sbjct: 591 MHIKGAELLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSR 637
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 63.3 bits (147), Expect = 1e-10
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFV--NLGIHPPKGVLLYGPPGTGKTLLARACA 489
++ DIG L+ + L E V+LPM E F NL + P KG+LL+GPPGTGKTLLA+A A
Sbjct: 349 KFEDIGALEDVKKALNELVILPMRRPELFARGNL-LRPCKGILLFGPPGTGKTLLAKALA 407
Query: 490 AQTKSTF 510
+ + F
Sbjct: 408 TEAGANF 414
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGTKRFDSEKAGDR 677
+ + G L + GD KL + F+ A + AP IIF+DE+D+ +G + SE R
Sbjct: 415 ISITGSTLTSKWFGDAEKLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSEHEATR 471
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 62.5 bits (145), Expect = 2e-10
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = +1
Query: 310 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
T ++D+ G+D+ +EL E +V + + +++V LG PP+GVLL G PGTGKTLLA+A A
Sbjct: 325 TITFADVAGVDEAKEEL-EEIVEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVA 383
Query: 490 AQTKSTF 510
++ F
Sbjct: 384 GESDVPF 390
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +3
Query: 468 IAGESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 647
+AGES V + + + V++++G GA VRD FA AK++AP+IIFIDE+DA+
Sbjct: 382 VAGES-----DVPFISCSASEFVELYVGMGASRVRDLFARAKKEAPSIIFIDEIDAVAKS 436
Query: 648 R 650
R
Sbjct: 437 R 437
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
++DIG LD+ + L E V+LP+ + F + P +G+LL+GPPGTGKT++A+A A +
Sbjct: 413 FADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIANEA 472
Query: 499 KSTF 510
++F
Sbjct: 473 GASF 476
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 638
+ + G+ K VR F LA + +P IIF+DE+D++
Sbjct: 484 ITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSM 519
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/68 (45%), Positives = 45/68 (66%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P ++ I GL+ + L EAVV+P+ + F L + P KG+LL+GPPGTGKT+LA+A
Sbjct: 107 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 165
Query: 487 AAQTKSTF 510
A + +TF
Sbjct: 166 ATECNTTF 173
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
++ +V + GD KL+R F LA+ AP+ IF+DE+DAI ++R
Sbjct: 176 ISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQR 220
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/68 (45%), Positives = 45/68 (66%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P ++ I GL+ + L EAVV+P+ + F L + P KG+LL+GPPGTGKT+LA+A
Sbjct: 98 PNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGL-LTPWKGILLFGPPGTGKTMLAKAV 156
Query: 487 AAQTKSTF 510
A + +TF
Sbjct: 157 ATECNTTF 164
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +3
Query: 516 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
++ +V + GD KL+R F LA+ AP+ IF+DE+DAI ++R
Sbjct: 167 ISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQR 211
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Frame = +1
Query: 259 PAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVL 438
P ++ +++ + D+ G+D+ Q+ +E V + E+F +G PKGVL
Sbjct: 206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVL 264
Query: 439 LYGPPGTGKTLLARACAAQTKSTF 510
L GPPGTGKTLLA+A A + F
Sbjct: 265 LIGPPGTGKTLLAKAIAGEAGVPF 288
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+G +R
Sbjct: 286 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 335
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
VD +++D+ G+D+ + EL E V + + + F +GI PP GVLL GPPG GKTL+
Sbjct: 421 VDGSTGVKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLV 479
Query: 475 ARACAAQTKSTF 510
A+A A + F
Sbjct: 480 AKAIAGEAGVPF 491
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = +3
Query: 513 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
++AG + V++ +G G+ +RD F AK P++IFIDE+DA+ T+R
Sbjct: 493 QMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRR 538
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +1
Query: 301 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 480
+ PT + D+ G+D EL+E +V + + LG P+GVLL GPPGTGKTLLAR
Sbjct: 327 KNPTVGFDDVEGVDSAKDELVE-IVSCLQGSINYKKLGARLPRGVLLVGPPGTGKTLLAR 385
Query: 481 ACAAQTKSTF 510
A A + F
Sbjct: 386 AVAGEAGVPF 395
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V ++ + V++F+G GA +RD F A++ +P+IIFIDELDA+G KR
Sbjct: 393 VPFFSVSASEFVELFVGRGAARIRDLFNAARKNSPSIIFIDELDAVGGKR 442
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ D+ G+D+ Q+ +E V + E+F +G PKGVLL GPPGTGKTLLA+A A +
Sbjct: 219 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEA 277
Query: 499 KSTF 510
F
Sbjct: 278 GVPF 281
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V ++G + V+MF+G GA VRD F AKE AP I+F+DE+DA+G +R
Sbjct: 279 VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 328
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP-KGVLLYGPPGTGKTLLARACAAQ 495
+ DIG L+K L E V+LP+ E F + P KG+LL+GPPGTGKT+LA+A A +
Sbjct: 819 FDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAVAKE 878
Query: 496 TKSTF 510
+ F
Sbjct: 879 ADANF 883
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGTKRFDSEKAGDR 677
+ ++ + + G+G K V+ F+LA + +P++IF+DE+D+ +G + E R
Sbjct: 884 INISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHPREHEASR 940
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLL 474
+D P ++ DI GL+ + + E V+ P+ + F P KG+LL+GPPGTGKT++
Sbjct: 1 MDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPGTGKTMI 59
Query: 475 ARACAAQTKSTF 510
+A A + K+TF
Sbjct: 60 GKAIAGEAKATF 71
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 474 GESLRCSNKVYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGTKR 650
G+++ K ++ L +IG+G KLVR F +A + PA+IF+DE+D+ + ++
Sbjct: 60 GKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRK 119
Query: 651 FDSEKAGDR 677
D E R
Sbjct: 120 SDGEHESSR 128
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/65 (47%), Positives = 42/65 (64%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 495
++SD+ G+D+ EL E +V + ++F LG PKGVLL GPPGTGKT+LARA A +
Sbjct: 225 KFSDVKGVDEAKAEL-EEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGE 283
Query: 496 TKSTF 510
F
Sbjct: 284 AGVPF 288
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +3
Query: 519 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+G + +MF+G GA+ VRD F+ AK+ +P IIFIDE+DAIG R
Sbjct: 292 SGSEFEEMFVGVGARRVRDLFSAAKKCSPCIIFIDEIDAIGGSR 335
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGI-HPPKGVLLYGPPGTGKTLLARACAAQ 495
+SDIG L+ L E V+LP+ E F + P KG+LL+GPPGTGKT+LA+A A +
Sbjct: 949 FSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATE 1008
Query: 496 TKSTF 510
+ F
Sbjct: 1009 AGANF 1013
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+ ++ + + G+G K V+ F+LA + AP++IF+DE+D++ +R
Sbjct: 1014 INISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1060
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/64 (50%), Positives = 39/64 (60%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ D+ G+D+ Q+ E V T EKF LG PKGVLL GPPGTGKTLLA+A A +
Sbjct: 222 FEDVAGVDEAKQDFEEIVEFLKT-PEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEA 280
Query: 499 KSTF 510
F
Sbjct: 281 GVPF 284
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V L+G + ++MF+G GA RD F AK +P I+FIDE+DA+G R
Sbjct: 282 VPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMR 331
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/64 (45%), Positives = 42/64 (65%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ D+ G D+ QE++E V + + +K+ +LG PKG LL GPPGTGKTLLA+A A ++
Sbjct: 321 FKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPGTGKTLLAKATAGES 379
Query: 499 KSTF 510
F
Sbjct: 380 GVPF 383
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V L ++G ++MF+G G VR F A++ AP+IIFIDE+DAIG R
Sbjct: 381 VPFLSISGSDFMEMFVGVGPSRVRHLFQEARQAAPSIIFIDEIDAIGRAR 430
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGI-HPPKGVLLYGPPGTGKTLLARACAAQ 495
+ DIG L+ + L E V+LP+ E F + P KG+LL+GPPGTGKT+LA+A A +
Sbjct: 962 FDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATE 1021
Query: 496 TKSTF 510
+ F
Sbjct: 1022 AGANF 1026
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
+ ++ + + G+G K V+ F+LA + AP++IF+DE+D++ +R
Sbjct: 1027 INISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 1073
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/79 (43%), Positives = 45/79 (56%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
++ K EV E ++D+ G D+ EL E V + + +K+ LG PKG LL GPP
Sbjct: 247 SKSKFQEVPETGVS-FADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPP 304
Query: 454 GTGKTLLARACAAQTKSTF 510
GTGKTLLARA A + F
Sbjct: 305 GTGKTLLARAVAGEAGVPF 323
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +3
Query: 519 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
A + V++F+G GA VRD F AK KAP I+FIDE+DA+G +R
Sbjct: 327 AASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 370
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/79 (36%), Positives = 48/79 (60%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
A++ + + + + D+ G ++ QE++E V + + +K+ +LG PKG LL GPP
Sbjct: 311 AQITRADKNSKNKIYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPP 369
Query: 454 GTGKTLLARACAAQTKSTF 510
GTGKTLLA+A A ++ F
Sbjct: 370 GTGKTLLAKATAGESAVPF 388
Score = 51.6 bits (118), Expect = 5e-07
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V L ++G ++MF+G G VR+ F A++ AP+IIFIDE+DAIG R
Sbjct: 386 VPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRAR 435
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 58.0 bits (134), Expect = 5e-09
Identities = 32/70 (45%), Positives = 41/70 (58%)
Frame = +1
Query: 301 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 480
E+ + + D+ G D QEL E VV + + KF LG PKG+LL G PGTGKTLLA+
Sbjct: 355 EKNVKTFKDVKGCDDAKQEL-EEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAK 413
Query: 481 ACAAQTKSTF 510
A A + F
Sbjct: 414 AIAGEAGVPF 423
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +3
Query: 519 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
AG + +MF+G GA+ VR F AK+KAP IIFIDE+DA+G+ R
Sbjct: 427 AGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 470
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 57.6 bits (133), Expect = 7e-09
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
++ K EV E + D+ G D+ EL E V + + +K+ LG PKG LL GPP
Sbjct: 235 SKSKFQEVPETGVT-FGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPP 292
Query: 454 GTGKTLLARACAAQTKSTF 510
GTGKTLLARA A + F
Sbjct: 293 GTGKTLLARAVAGEAGVPF 311
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +3
Query: 519 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
A + V++F+G GA VRD F AK KAP I+FIDE+DA+G +R
Sbjct: 315 AASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQR 358
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 316 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 495
+++D+ GL K EL E +V TH E + G+ P G+LL GPPG GKTLLA+A A +
Sbjct: 408 KFTDVAGLGKIRLEL-EEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGE 466
Query: 496 TKSTF 510
F
Sbjct: 467 AGVNF 471
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = +3
Query: 501 VYILKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 650
V ++ Q V++++G GA VR + A+E AP+++FIDELDA+G +R
Sbjct: 469 VNFFSISASQFVEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRER 518
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPP-KGVLLYGPPGTGKTLLARACAAQ 495
+ DIG L+ L E V+LP E F + P G+LL+GP GTGKT+LA+A A +
Sbjct: 734 FDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVATE 793
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = +3
Query: 519 AGPQLVQM----FIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 638
AG L+ M + +G K V+ F+LA + +P+IIF+DE++++
Sbjct: 794 AGANLINMSMSRWFSEGEKYVKAVFSLASKISPSIIFLDEVESM 837
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 510 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR-FDSEKAGDR 677
+ + GP+L+ +IG + VRD F+ A AP I+F DE D+I KR D+ DR
Sbjct: 907 ISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVTDR 963
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 319 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ D+GG+ + E + LP + F + VLLYGPPG GKT + A AA
Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902
Query: 499 KSTF 510
F
Sbjct: 903 SLRF 906
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 400 FVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
F I P +L+YGPPG+GKT+LARA A
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAA 614
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/105 (28%), Positives = 54/105 (51%)
Frame = +1
Query: 187 RCRETQTRRLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIE 366
R + T R R +Q+ + + +D R+K ++ P + ++ I + ++I E++
Sbjct: 383 RVKSYFTYRKRRIKQKRKAGIDPIKTAFD-RMKRVKNPPIPLKNFASIESMREEINEVVA 441
Query: 367 AVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
+ P +E +G P+GVL+ G GTGKT LA A AA+ +
Sbjct: 442 FLQNPKAFQE----MGARAPRGVLIVGERGTGKTSLALAIAAEAR 482
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 328 IGGLDKQIQELIEAVVLPMTHKEKFVN-LGIHPPKGVLLYGPPGTGKTLLAR 480
IGGL + ++ + LGI KG+LL+GPPGTGKTL+AR
Sbjct: 217 IGGLGAEFADIFRRAFASRVFPPHVTSRLGIKHVKGMLLFGPPGTGKTLMAR 268
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Frame = +3
Query: 522 GPQLVQMFIGDGAKLVRDAFALAKEKAPA--------IIFIDELDAIGTKR 650
GP+++ F+G+ K VRD FA A++ +I DE+DAI R
Sbjct: 284 GPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSR 334
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 337 LDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
L + +L++ +++ M + ++ + +GVLL GPPGTGKTL AR A ++ F
Sbjct: 497 LGGDVWDLLDELMIYMGNPMQYYEKDVAFVRGVLLSGPPGTGKTLFARTLAKESGLPF 554
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 555 GAKLVRDAFALAKEKAPAIIFIDELDAI 638
GA + + F++A+ APA +F+DE+DAI
Sbjct: 569 GAAKINEMFSIARRNAPAFVFVDEIDAI 596
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 343 KQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ +E++ ++ KE + +G +G LLYGPPGTGK+ + A A
Sbjct: 214 KKKEEIVNDLIAFSNGKEYYKKIGKAWKRGYLLYGPPGTGKSTMISAMA 262
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 337 LDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
L+K+I++L A H+ F N +L YGPPGTGKT+ AR A ++
Sbjct: 377 LEKRIEQLANATANTKAHQAPFRN--------ILFYGPPGTGKTMAARELARRS 422
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +1
Query: 301 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLAR 480
E+P E L +I+ L A +HK F N+ + YGPPGTGKT++AR
Sbjct: 352 EKPLENVILHRSLKTRIERLARATANTKSHKAPFRNM--------MFYGPPGTGKTMVAR 403
Query: 481 ACAAQT 498
A ++
Sbjct: 404 EIARKS 409
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1
Query: 352 QELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
+++IE + + KE + +G +G LLYGPPGTGK+ L A A K
Sbjct: 229 RDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLK 278
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +1
Query: 352 QELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
+++IE + + KE + +G +G LLYGPPGTGK+ L A A K
Sbjct: 229 RDVIEDLDRFIRRKEFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLK 278
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 337 LDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
L K+I+ L A +H+ F N+ + YGPPGTGKT++AR A ++
Sbjct: 349 LKKRIERLARATANTKSHQAPFRNM--------MFYGPPGTGKTMVAREIARKS 394
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 283 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNL--------GIHPPKGVL 438
K + D + +I G D+Q +E+ + +++ + E + ++ + P+ VL
Sbjct: 306 KPLGDDSMDEISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVL 365
Query: 439 LYGPPGTGKTLLARACAAQ 495
GPPGTGKT AR A Q
Sbjct: 366 FEGPPGTGKTSCARVIANQ 384
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 531 LVQMFIGDGAKLVRDAFALAKEKAP-AIIFIDELDAIGTKRFDSE 662
++ + G+ +L+ F+ A E AIIF+DE+DA R DSE
Sbjct: 397 VMSKYYGESERLLGAVFSQANELPDGAIIFLDEIDAFAISR-DSE 440
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 337 LDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
+DK+ E+ +V KE + +G +G LLYGPPGTGK+ + A A
Sbjct: 208 IDKK-DEIFRDLVAFRDGKEYYDRIGKAWKRGYLLYGPPGTGKSTMIAAMA 257
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
K+ + +G +G LLYGPPGTGKT L A A K
Sbjct: 234 KDFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIANYLK 270
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 352 QELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
+++I+ + + KE + +G +G LLYGPPGTGK+ L A A K
Sbjct: 219 KKIIDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK 268
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
K+ F ++G +G LLYGPPGTGK+ + A A K
Sbjct: 228 KDFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIANHMK 264
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ F +G +G LLYGPPGTGK+ L A A
Sbjct: 20 KDFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIA 52
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 343 KQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ +E++ + KE + +G +G LL+GPPGTGK+ + A A
Sbjct: 209 KKKEEILNDLAAFSNGKEYYKKIGKAWKRGYLLHGPPGTGKSTMIAAMA 257
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 238 LFDLRKLPA-EYDARVKA-MEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNL 411
L + RK A E + KA ME+ E + L Q+++ + ++L + +N+
Sbjct: 181 LQEQRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGMLLDERRRALGLNI 240
Query: 412 GIHPPKGVLLYGPPGTGKTLLAR 480
G P + G PGTGKT++AR
Sbjct: 241 GTRRPPHMAFLGNPGTGKTMVAR 263
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 421 PPKGVLLYGPPGTGKTLLARACAAQT 498
P + +LL+GPPGTGKT+ AR A ++
Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKS 421
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 352 QELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
+ +IE + + K+ + +G +G LLYGPPGTGK+ L A A K
Sbjct: 221 RSMIEDLDRFVGRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLK 270
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 352 QELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
+++I+ + + +E + +G +G LLYGPPGTGK+ L A A K
Sbjct: 220 KKIIDDMERFLKRREFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK 269
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 337 LDKQIQE-LIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
LD ++++ L+E + + K + +G +G LLYGPPGTGK+ L A A
Sbjct: 217 LDPEVKKNLVEDLDRFVQRKGFYGRVGKAWKRGYLLYGPPGTGKSSLIAAIA 268
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 343 KQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ ++++ + K+ + +G +G LLYGPPGTGK+ + A A
Sbjct: 209 KKKEQILNDLAAFNNGKDYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMA 257
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 343 KQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ +E+ ++ K+ + +G +G LL+GPPGTGK+ + A A
Sbjct: 216 KKKEEIKNDLIKFSNSKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMA 264
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 33.9 bits (74), Expect = 0.099
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 334 GLDKQIQELIEAVVLPMTHKEKFVNLGIHPPK-GVLLYGPPGTGKTLLARACA 489
G+D +E I+ ++ T + + P K G LL+GPPGTGK+ + A A
Sbjct: 197 GMDLDKKEEIKKDLIKFTKGKDYYRKVAKPWKRGYLLFGPPGTGKSTMISAIA 249
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 33.9 bits (74), Expect = 0.099
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGV 435
+ E+P +++ + GL+ Q L EAV+LP+ + F I+ P+ V
Sbjct: 84 IREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACA 489
+G LLYGPPGTGK+ L A A
Sbjct: 239 RGYLLYGPPGTGKSSLIAAMA 259
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACA 489
+G LLYGPPGTGK+ L A A
Sbjct: 300 RGYLLYGPPGTGKSSLIAAMA 320
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 32.7 bits (71), Expect = 0.23
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Frame = +1
Query: 151 PANIFL-ARHRLGRCRETQTRRLGRSQQRLLFDL-RKLPAEYDARVKAMEVDERPTEQYS 324
P+NI+ A+ L R ++ Q ++ G + R+ +L LP + + +++ S
Sbjct: 315 PSNIWKHAQRELRRLKKMQPQQPGYNSSRVYLELLADLPWDKASEEHELDLKAAKERLDS 374
Query: 325 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLL--YGPPGTGKTLLARACAA 492
D GL K Q +IE + + + +G +L GPPG GKT LA + AA
Sbjct: 375 DHYGLAKVKQRIIEYLAVRKLKPDA---------RGPVLCFVGPPGVGKTSLASSIAA 423
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACA 489
+LL+GPPGTGKT L +A A
Sbjct: 205 ILLHGPPGTGKTSLCKALA 223
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ + +G +G LL+GPPGTGK+ + A A
Sbjct: 229 KDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMA 261
>At1g56510.1 68414.m06498 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
AR + +++ P + D+ GL++ ++E++ + L KE +GI GP
Sbjct: 168 ARDVSTKINVTPCRDFDDMVGLERHLKEMVSLLDLD---KEGVKMVGIS--------GPA 216
Query: 454 GTGKTLLARACAAQTKSTF 510
G GK+ +A+A ++ STF
Sbjct: 217 GIGKSTIAKALHSRHSSTF 235
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACA 489
+G LLYGPPGTGK+ + A A
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMA 258
>At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C, Schizosaccharomyces
pombe, PIR2:S54297
Length = 275
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 428 KEFFYMDLLVQGRHCWRELALLKQSLHFEAG 520
K FF MD ++QG+ WRELA+L ++ +G
Sbjct: 93 KAFFRMDEMMQGQRGWRELAVLGDKINKFSG 123
>At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C, Schizosaccharomyces
pombe, PIR2:S54297
Length = 357
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 428 KEFFYMDLLVQGRHCWRELALLKQSLHFEAG 520
K FF MD ++QG+ WRELA+L ++ +G
Sbjct: 93 KAFFRMDEMMQGQRGWRELAVLGDKINKFSG 123
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACA 489
+G LLYGPPGTGK+ + A A
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMA 258
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ + +G +G LL+GPPGTGK+ + A A
Sbjct: 232 KDYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIA 264
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 397 KFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQT 498
+ V+L + + VLLYGP G+GK+ L R A ++
Sbjct: 344 EMVSLAVSQKRPVLLYGPSGSGKSALIRKLADES 377
>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
transaminase A (ASP3) (YLS4) identical to SP|P46644
Aspartate aminotransferase, chloroplast precursor (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
identical to cDNA YLS4 mRNA for aspartate
aminotransferase (ASP3), partial cds GI:13122285
Length = 449
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 83 EDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVN 229
E+G + L+ RK + +I TR +LP++GLV+ KL ++G +
Sbjct: 86 EEGKPLVLNVVRKAEQQLINDRTRIKEYLPIVGLVEFNKLSAKLILGAD 134
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ + +G +G LL+GPPGTGK+ + A A
Sbjct: 228 KDYYRKVGKPWKRGYLLFGPPGTGKSTMISAMA 260
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACAAQ 495
+L YGPPGTGKT A A A Q
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQ 53
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACAAQ 495
+L YGPPGTGKT A A A Q
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQ 65
>At5g19550.1 68418.m02328 aspartate aminotransferase, cytoplasmic
isozyme 1 / transaminase A (ASP2) identical to SP|P46645
Aspartate aminotransferase, cytoplasmic isozyme 1 (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana}
Length = 405
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 83 EDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILES 256
E+G + LD RK + ++ +R ++P++G+ D KL ++G DS I ES
Sbjct: 42 EEGKPLVLDVVRKAEQQLVNDPSRVKEYIPIVGISDFNKLSAKLILGA--DSPAITES 97
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQTKS 504
I P + LL GPPG+GK+ L +A + +T++
Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKTET 198
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 382 MTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF-*SWLVHNLCRC 543
M + + L + + + ++GPPG GKT +AR +Q +F S ++ N+ C
Sbjct: 209 MENMRALLRLDLDDVRMIGIWGPPGIGKTTIARFLLSQVSKSFQLSTIMVNIKEC 263
>At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 531
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P+ +SD+ G++ +++L E+ + L ++ + + ++GPPG GKT +AR
Sbjct: 233 PSSDFSDLVGMEDHMKKL-----------ERMLYLDLNDVRMIGIWGPPGIGKTSIARVL 281
Query: 487 AAQTKSTF 510
+ +F
Sbjct: 282 FRKHSDSF 289
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTK 501
K+ + +G + LYGPPGTGK+ L A A K
Sbjct: 209 KDYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMANYLK 245
>At4g28070.1 68417.m04026 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 464
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 397 KFVN-LGIHPPKGVLLYGPPGTGKTLL 474
KFV+ + P KG+ LYG GTGKT+L
Sbjct: 123 KFVSHSSVSPVKGLYLYGGVGTGKTML 149
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 59 DVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDA 193
D + +EEEE+ VV++ ++KGK + +ST F + A
Sbjct: 279 DEEEEEEEEEEVVVEVKKKKKGKAKIEHSSTAPPEFRRAVAKTSA 323
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLA 477
K +LL GPPGTGKT LA
Sbjct: 67 KALLLAGPPGTGKTALA 83
>At3g03250.1 68416.m00321 UTP--glucose-1-phosphate
uridylyltransferase, putative / UDP-glucose
pyrophosphorylase, putative / UGPase, putative strong
similarity to SP|P19595 UTP--glucose-1-phosphate
uridylyltransferase (EC 2.7.7.9) (UDP-glucose
pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
contains Pfam profile PF01704: UTP--glucose-1-phosphate
uridylyltransferase
Length = 469
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 649 RFVPIASSSSMKMI-AGAFSLANAKASRTSLAPSPMNICTSCGPASFKM*TLFEQRKLSP 473
RF+P+ +SS + ++ + ++L + +R +P N GP K+ T + K P
Sbjct: 355 RFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIP 414
Query: 472 AMSSLYQEVHIKELLWVG 419
++ L + + +W G
Sbjct: 415 SIVEL-DSLKVSGDVWFG 431
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQTKST 507
I P + LL GPP +GKT L +A A + T
Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGKLDDT 226
>At2g25070.1 68415.m02999 protein phosphatase 2C, putative / PP2C,
putative
Length = 355
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 428 KEFFYMDLLVQGRHCWRELALLKQSLHFEAG 520
+ FF MD ++QG+ WRELA+L ++ +G
Sbjct: 93 RAFFRMDDMMQGQRGWRELAVLGDKMNKFSG 123
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 439 LYGPPGTGKTLLARACAAQTKSTF 510
+YGP G GKT +ARA ++ S+F
Sbjct: 215 IYGPAGIGKTTIARALHSRLSSSF 238
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 352 QELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
+ LI+ + L ++ ++ + +G H + LL+G PG GKT L A A
Sbjct: 175 RRLIDDIDLFISKEDFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIA 220
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQTKST 507
+ P + LL GPP +GKT L +A A + T
Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALAGKLDDT 228
>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1131
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/79 (24%), Positives = 43/79 (54%)
Frame = +1
Query: 274 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPP 453
AR + +++ P++ + D+ GL+ ++++ +L + +K++ + +GI GP
Sbjct: 173 ARDVSYKLNATPSKDFEDMMGLEAHLKKIQS--LLRLDYKDEALIIGIS--------GPA 222
Query: 454 GTGKTLLARACAAQTKSTF 510
G GK+ +ARA ++ F
Sbjct: 223 GIGKSTIARALESRLSDRF 241
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 29.9 bits (64), Expect = 1.6
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = +1
Query: 187 RCRETQTRRLGRSQQRLLFDLRKLPAEYDARVKAM-EVDERPTEQYSDIGGLDKQIQEL- 360
R RE +TR R KL + A +K++ E+ ER +D G + +E+
Sbjct: 92 RRREQRTRMRRRYLSCFGCADYKLCKKVSAILKSIGELRERSEAIKTDGGSIQVTCREIP 151
Query: 361 IEAVVLPMTHKEKFVN-LGIHPPKGVL-LYGPPGTGKTLLARA 483
I++VV T E+ + L +G++ +YGP G GKT L ++
Sbjct: 152 IKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQS 194
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 403 VNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF*SWLVHNL 534
+ L HP + + + GP G GK+ L AA+T T S L++++
Sbjct: 34 ITLTSHPSQILAIIGPSGAGKSTLLDILAARTSPTSGSILLNSV 77
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 394 EKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
E+ + L + + + ++GPPG GKT +AR Q F
Sbjct: 279 EQLLRLDLDEVRIIGIWGPPGIGKTTIARFLLNQVSDRF 317
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 394 EKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
E+ + L + + + ++GPPG GKT +AR Q F
Sbjct: 279 EQLLRLDLDEVRIIGIWGPPGIGKTTIARFLLNQVSDRF 317
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 394 EKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
E+ + L + + + ++GPPG GKT +AR Q F
Sbjct: 279 EQLLRLDLDEVRIIGIWGPPGIGKTTIARFLLNQVSDRF 317
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 394 EKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
E+ + L + + + ++GPPG GKT +AR Q F
Sbjct: 283 EQLLRLDLDEVRMIGIWGPPGIGKTTIARFLFNQVSDRF 321
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACA 489
+LLYGPPGTGKT A A
Sbjct: 75 LLLYGPPGTGKTSTILAVA 93
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 382 MTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
+T E ++L K V + GP G GKT +ARA ++ + F
Sbjct: 197 LTEMESLLDLDYDGVKMVGISGPAGIGKTTIARALQSRLSNKF 239
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 406 NLGIHPPKGVLLYGPPGTGKTLLARA 483
N G PP V++ GPPG GK+L+ ++
Sbjct: 77 NYGEAPPFVVVVQGPPGVGKSLVIKS 102
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACA 489
VLL GP G+GKTLLA+ A
Sbjct: 265 VLLLGPTGSGKTLLAKTLA 283
>At4g30490.1 68417.m04329 AFG1-like ATPase family protein contains
Pfam profile: PF03969 AFG1-like ATPase
Length = 497
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 421 PPKGVLLYGPPGTGKTLLARACAAQTKSTF*SWLVH 528
P KG+ LYG GTGKT+L Q T+ +H
Sbjct: 160 PVKGLYLYGGVGTGKTMLMDLFFDQLPCTWKKQRIH 195
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKT 468
+++ +++G+ VL+ GPPGTGKT
Sbjct: 262 QKEAIDVGLSRKSFVLIQGPPGTGKT 287
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
+ P + LL GPPG GKT L +A + +
Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALSGK 190
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
+ P + LL GPPG GKT L +A + +
Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALSGR 187
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQTKS 504
I P + LL GPPG GKT L +A + ++
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALSGNLEN 191
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 370 VVLPMTHKE---KFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 495
++ P HK K ++ I P + LL GPPG+GK+ L A A +
Sbjct: 165 IIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGK 209
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACA 489
VLL GP G+GKTLLA+ A
Sbjct: 311 VLLMGPTGSGKTLLAKTLA 329
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACA 489
+LL GP G+GKTLLA+ A
Sbjct: 226 ILLMGPTGSGKTLLAKTLA 244
>At5g52860.1 68418.m06561 ABC transporter family protein
Length = 589
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 403 VNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF*SWLVHNL 534
+ L HP + + + GP G GK+ L A++T T S L++++
Sbjct: 48 ITLTAHPTEILAVVGPSGAGKSTLLDILASKTSPTSGSILLNSI 91
>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Non-consensus TT donor splice site at exon 1
Length = 1104
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 382 MTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
+T + F+ L K + ++GP G GKT +ARA Q + F
Sbjct: 192 LTKLDSFLCLESDDVKMIGIWGPAGIGKTTIARALFNQLSTGF 234
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 439 LYGPPGTGKTLLARACAAQTKSTF 510
+ GPPG GKT +ARA Q F
Sbjct: 219 IVGPPGIGKTTIARALRDQISENF 242
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
I P + LL GPPG GKT L A + +
Sbjct: 159 IRPKRMTLLLGPPGCGKTTLLLALSGR 185
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Frame = +1
Query: 208 RRLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMT 387
+++ R R+ +L + Y++ E + + + K++ + + T
Sbjct: 123 KKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLTGAKT 182
Query: 388 HKEKF-----VNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKS 504
H+ K VN I P + LL GPP GKT L +A + ++
Sbjct: 183 HEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLEN 226
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
K + ++GPPG GKT +AR+ Q F
Sbjct: 259 KTIGIWGPPGVGKTTIARSLYNQHSDKF 286
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 433 VLLYGPPGTGKTLLARACAAQTK 501
++ +GPPGTGKT +A++ +K
Sbjct: 140 IVFWGPPGTGKTSIAKSLINSSK 162
>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 220 RSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQ 348
R Q++L+D KL E D +++ +E + E++ + LD+Q
Sbjct: 311 RHIQKILYDKEKLSNELDRKMRDLESRAKQLEKHEALTELDRQ 353
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 355 ELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACAAQ 495
E ++AV + + P L GP G GKT LA+A A Q
Sbjct: 541 EAVKAVAAAILRSRVGLGRPQQPSGSFLFLGPTGVGKTELAKALAEQ 587
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +2
Query: 182 LVDAEKLKPGDLVGVNKDSYLILESSQRSMTPE*RQWR 295
L ++E+ LVG++ +YL+ ESSQ +++P WR
Sbjct: 686 LQESERELRERLVGLSFSAYLLAESSQGTISPPSWNWR 723
>At1g61420.1 68414.m06921 S-locus lectin protein kinase family
protein contains Pfam domains, PF00954: S-locus
glycoprotein family, PF00069: Protein kinase domain, and
PF01453: Lectin (probable mannose binding)
Length = 807
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 415 CRDSQISPCVSLATLQLQLIPVSVYPDLQYLSIVQLVSHLPP 290
CR ++ CV + L +Q P L+ LS++ S LPP
Sbjct: 732 CRPLEVERCVQIGLLCVQHQPADRPNTLELLSMLTTTSDLPP 773
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 295 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKF 402
+ E+P +++ + GL+ Q L EAV+LP+ + F
Sbjct: 84 IREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P+ + ++ GLD +++L + L + ++ +GI +GP G GKT +ARA
Sbjct: 177 PSRDFEEMVGLDAHLRKLDSLLCL---NSDEVKMIGI--------WGPAGIGKTTIARAL 225
Query: 487 AAQTKSTF 510
Q + F
Sbjct: 226 YNQLSTNF 233
>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
uridylyltransferase, putative / UDP-glucose
pyrophosphorylase, putative / UGPase, putative strong
similarity to SP|P19595 UTP--glucose-1-phosphate
uridylyltransferase (EC 2.7.7.9) (UDP-glucose
pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
contains Pfam profile PF01704: UTP--glucose-1-phosphate
uridylyltransferase
Length = 470
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 649 RFVPIASSSSMKMI-AGAFSLANAKASRTSLAPSPMNICTSCGPASFKM*TLFEQRKLSP 473
RF+P+ ++S + ++ + ++L + +R +P N GP K+ + + K P
Sbjct: 356 RFLPVKATSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIP 415
Query: 472 AMSSLYQEVHIKELLWVG 419
++ L + + +W G
Sbjct: 416 SIVEL-DSLKVSGDVWFG 432
>At5g17310.1 68418.m02027 UTP--glucose-1-phosphate
uridylyltransferase, putative / UDP-glucose
pyrophosphorylase, putative / UGPase, putative strong
similarity to SP|P19595 UTP--glucose-1-phosphate
uridylyltransferase (EC 2.7.7.9) (UDP-glucose
pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
contains Pfam profile PF01704: UTP--glucose-1-phosphate
uridylyltransferase
Length = 390
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -1
Query: 649 RFVPIASSSSMKMI-AGAFSLANAKASRTSLAPSPMNICTSCGPASFKM*TLFEQRKLSP 473
RF+P+ ++S + ++ + ++L + +R +P N GP K+ + + K P
Sbjct: 276 RFLPVKATSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIP 335
Query: 472 AMSSLYQEVHIKELLWVG 419
++ L + + +W G
Sbjct: 336 SIVEL-DSLKVSGDVWFG 352
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 439 LYGPPGTGKTLLARACAAQTKSTF 510
++GPPG GKT +AR Q +F
Sbjct: 262 IWGPPGIGKTTIARVVYNQLSHSF 285
>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 220 RSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQ 348
R QR+L+D KL E D +++ +E + E++ + L++Q
Sbjct: 312 RHIQRILYDKEKLRNELDRKMRDLESRAKQLEKHEALTELERQ 354
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
I P + LL GPP +GKT L A A +
Sbjct: 170 IKPSRMTLLLGPPSSGKTTLLLALAGK 196
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
I P + LL GPP +GKT L A A +
Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALAGR 184
>At1g63730.1 68414.m07212 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 966
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/92 (23%), Positives = 48/92 (52%)
Frame = +1
Query: 235 LLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG 414
L +D E AR + +++ ++ + D+ G++ +Q++ +L + ++++ + +G
Sbjct: 155 LNWDKESKMVETIARDVSNKLNTTISKDFEDMVGIEAHLQKMQS--LLHLDNEDEAMIVG 212
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
I GP G GKT +ARA ++ S+F
Sbjct: 213 I--------CGPSGIGKTTIARALHSRLSSSF 236
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Frame = +1
Query: 211 RLGRSQQRLLFDLRKLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTH 390
+L + R+ DL + +D EV + + + + + + L
Sbjct: 104 KLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNR 163
Query: 391 KEKFVNLG-----IHPPKGVLLYGPPGTGKTLLARACAAQ 495
K+KF L + P + LL GPP +GKT L A A +
Sbjct: 164 KKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGK 203
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana];
similar to disease resistance protein RPP1-WsB
(GI:3860165) [Arabidopsis thaliana]
Length = 1996
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 310 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
+ + D+ GL+ ++E+ +L + +K+ + +GI GP G GKT +ARA
Sbjct: 138 SRDFDDMVGLEAHLEEM--KYLLDLDYKDGAMIVGI--------CGPAGIGKTTIARALY 187
Query: 490 AQTKSTF-*SWLVHNL 534
+ S+F S V NL
Sbjct: 188 SLLLSSFQLSCFVENL 203
>At3g58120.1 68416.m06481 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
;supported by cDNA gi|15100054|gb|AF401300.1|AF401300
Length = 329
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 449 GPYKRTPLGGWMPRFTNFSLCVIGNTTASINSCICLSRPPIS 324
GP ++ P WM F +FS G SI+ I PP S
Sbjct: 38 GPQQQNP--SWMDEFLDFSATRRGTHRRSISDSIAFLEPPSS 77
>At3g09240.1 68416.m01098 protein kinase-related low similarity to
protein kinase GI:166809; contains Pfam profile:
Eukaryotic protein kinase domain
Length = 477
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Frame = -3
Query: 608 CWCLLFSQCKGVADKLG------TITNEHLHKLWTSQLQ-NVDF 498
CW + S + +KLG +TNE ++WT Q+Q N+D+
Sbjct: 336 CWRVDLSGMHELLEKLGYGEDDVVVTNEFSFQMWTGQMQENMDY 379
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 391 KEKFVNLGIHPPKGVLLYGPPGTGKTLLARACA 489
K+ + LG + LLYGP GTGK+ A A
Sbjct: 220 KQYYNRLGRVWKRSYLLYGPSGTGKSSFVAAMA 252
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 439 LYGPPGTGKTLLARACAAQTKSTF 510
++GPPG GKT + R Q S+F
Sbjct: 256 IWGPPGIGKTTIVRFLYNQLSSSF 279
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
I P + LL GPP +GKT L A A +
Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGK 220
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 415 IHPPKGVLLYGPPGTGKTLLARACAAQ 495
+ P + LL GPP +GKT L A A +
Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALAGK 218
>At5g60370.1 68418.m07570 expressed protein predicted protein,
Arabidopsis thaliana
Length = 413
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 643 VPIASSSSMKMIAGAFSLANAKASRTSLAPSPMNICTSCGPASFKM*TLFEQRKLS 476
+ I S M ++ A + + + + SP I P + + TLF +RKLS
Sbjct: 44 IEIVSEEEMAILDAALAASRSILPSVIRSVSPSRITAGGSPKTIRSITLFSKRKLS 99
>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 439 LYGPPGTGKTLLARACAAQTKSTF 510
++G PG GKT LA+A Q S F
Sbjct: 177 IWGMPGIGKTTLAKAVFDQMSSAF 200
>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1085
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 427 KGVLLYGPPGTGKTLLARACAAQTKSTF 510
K + ++GP G GK+ +ARA Q S+F
Sbjct: 208 KMIGIWGPAGIGKSTIARALYNQLSSSF 235
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 412 GIHPPKGVLLYGPPGTGKTLLARACAAQTKSTF 510
G K + L GPPG GKT + R+ A F
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKF 485
>At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P+ +SD G++ I+ LI + +K +GI GP TGKT + RA
Sbjct: 174 PSNNFSDFVGIEAHIEALISMLRFD---SKKARMIGI--------CGPSETGKTTIGRAL 222
Query: 487 AAQTKSTF 510
++ KS F
Sbjct: 223 YSRLKSDF 230
>At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 796
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P+ +SD G++ I+ LI + +K +GI GP TGKT + RA
Sbjct: 174 PSNNFSDFVGIEAHIEALISMLRFD---SKKARMIGI--------CGPSETGKTTIGRAL 222
Query: 487 AAQTKSTF 510
++ KS F
Sbjct: 223 YSRLKSDF 230
>At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 520
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 307 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIHPPKGVLLYGPPGTGKTLLARAC 486
P+ +SD G++ I+ LI + +K +GI GP TGKT + RA
Sbjct: 174 PSNNFSDFVGIEAHIEALISMLRFD---SKKARMIGI--------CGPSETGKTTIGRAL 222
Query: 487 AAQTKSTF 510
++ KS F
Sbjct: 223 YSRLKSDF 230
>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 309
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Frame = +2
Query: 140 KTSTRQTYFLPVIGLVDAEKLKPG---------DLVGVNKDSYLILESSQRSMTPE*RQW 292
K+ + + + L D+ L PG L+ NKD+YLIL+ ++R R+W
Sbjct: 62 KSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQGNERRFHSVKREW 121
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 424 PKGVLLY-GPPGTGKTLLARACAAQ 495
P G L+ GP G GKT LA+A A Q
Sbjct: 598 PTGSFLFLGPTGVGKTELAKALAEQ 622
>At1g31770.1 68414.m03899 ABC transporter family protein contains
Pfam profile: PF00005: ABC transporter
Length = 648
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 391 KEKFVNLGIH----PPKGVLLYGPPGTGKTLLARACAAQTKSTF*SWLVHN 531
KEK + GI P + + + GP G+GKT L A + TF +++N
Sbjct: 77 KEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTFSGKVMYN 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,520
Number of Sequences: 28952
Number of extensions: 341314
Number of successful extensions: 1554
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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