Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30938X
(549 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 54 6e-08
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 4e-06
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 41 6e-04
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 39 0.002
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 35 0.038
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 35 0.038
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.47
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 31 0.47
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 29 2.5
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 27 7.6
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14) 27 7.6
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 7.6
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 54.4 bits (125), Expect = 6e-08
Identities = 24/50 (48%), Positives = 35/50 (70%)
Frame = +1
Query: 352 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQM 501
+D E+ RGITI++A +++T + + D PGH D+IKNMITGT+QM
Sbjct: 12 LDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQM 61
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 352 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
+D EE+ +G T+ V + T+ +H+ D PGH ++ NMI+G Q D
Sbjct: 197 LDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQAD 247
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 41.1 bits (92), Expect = 6e-04
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Frame = +1
Query: 256 IGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQT----E 423
+GHVD GKT+L A++ S A D P+ + RGIT+++ +Q
Sbjct: 41 LGHVDSGKTSLAKALSTTAST---------ASFDKNPQSQERGITLDLGFSSFQVALPEH 91
Query: 424 QRHYGH---------TDCPGHADYIKNMITGTAQMDG 507
R G DCPGHA IK +I G AQ+ G
Sbjct: 92 LRSAGSEHDLLQMTLVDCPGHASLIKTII-GGAQIIG 127
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 391 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
++V +QT+ + D PGH D+I NMITG AQ D
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQAD 38
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 IGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV-AHVEYQTE 423
+ HVDHGK+TL + +V ++ + +D E+ RGIT+ HV++ E
Sbjct: 1947 VAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITVKAQGHVDFSYE 2002
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 35.1 bits (77), Expect = 0.038
Identities = 29/91 (31%), Positives = 39/91 (42%)
Frame = +1
Query: 232 KAPLQCWQIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVE 411
+A Q IGHV HGK+T + K LS + + K E R ITI + +
Sbjct: 20 RASAQARTIGHVAHGKST----VVKALSGVQTVRFKN---------ELERNITIKLGYAN 66
Query: 412 YQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
+ DCPGH + M+ G A MD
Sbjct: 67 AKV--------DCPGHDILMATMLNGAAVMD 89
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 35.1 bits (77), Expect = 0.038
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +1
Query: 256 IGHVDHGKTTLT-------AAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEY 414
I H D GKTTLT AI + + + KKG A D E+ RGI++ + + +
Sbjct: 16 ISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKG-ATSDFMEIERQRGISVATSVLAF 74
Query: 415 QTEQRHYGHTDCPGHADYIKNMITGTAQMDGV 510
+ D PGH D+ ++ +D V
Sbjct: 75 NYRDKKINILDTPGHKDFAEDTFRTLTAVDSV 106
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 256 IGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 393
I HVDHGK+TLT ++ + A+ D +E+ R ITI
Sbjct: 24 IAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITI 69
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 31.5 bits (68), Expect = 0.47
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 106 CEISSEAKPVCKCTKHNSPVRIDS 177
C++S+EAKP + +++ SPVR+D+
Sbjct: 1953 CKLSAEAKPTFEWSRNGSPVRLDN 1976
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 30.7 bits (66), Expect = 0.82
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -1
Query: 546 VALHHQLQLLLIYTIHLCCACNHVLNVVSMTWAVSVSIMPLFGLVFDMSHINSDTSSLLL 367
+A+HH Q LLI+ H+C C + ++ T V+ +I + L D + + ++L
Sbjct: 1947 IAVHHNKQALLIFWYHVCMDCEVNVAFITDTTQVANNIALNYILSSDEPEVITFNRNVLP 2006
Query: 366 G--GIVNIC 346
G++ +C
Sbjct: 2007 AYYGLLRLC 2015
>SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 301 TKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 423
T +L D + +K Y +D++ EKA GI ++ +H E T+
Sbjct: 97 TYILLDDSHGEKTAYILLDDSHAEKATGILLDDSHAEKATD 137
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 388 TINVAHVEYQTEQRHYGHTDCPGHADY 468
T+ H Y T H HT CP H Y
Sbjct: 148 TLRTTHTTYATHTVHTRHTACPTHYTY 174
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1
Query: 256 IGHVDHGKTTLTAAI 300
+GHVDHGKTTL A+
Sbjct: 34 MGHVDHGKTTLLDAL 48
>SB_37376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 41 LVLKSSFNMASITFVKS-LVSPAVKLVLKQSQCANVRNTTVLSGLTPLSIILKRH----Y 205
L+L FN +++ L A + K+ C N + + LT L+ KRH Y
Sbjct: 172 LLLAGLFNKGALSSATMPLAISAFRDQFKEMSCINKLTSVCVIALTALTTTRKRHSDNEY 231
Query: 206 AEKQIFERTK 235
AEK++ R K
Sbjct: 232 AEKRVEYRYK 241
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 454 GHADYIKNMITGTAQMDGV 510
GHADYI +MIT TA V
Sbjct: 434 GHADYISHMITTTADNGSV 452
>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
Length = 239
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 328 AQKKGYADIDNAPE-EKARGITINVAH---VEYQTEQRHYGHTDCPGHADYIKNMITGTA 495
A+K YA NAP + G+ V V+Y Q HYGH D + + ++TG
Sbjct: 150 AKKILYAWAGNAPSLDLPEGVAFKVGQDSDVKYLVLQVHYGHVD-----KFFRTVMTGYR 204
Query: 496 QMDG 507
+ +G
Sbjct: 205 ERNG 208
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 67 GFNNICEKFG*SSCEISSEAKPVCKC 144
GFN C+ S+CE+ + KP C C
Sbjct: 1350 GFN--CDSPPYSTCEVQDDGKPACVC 1373
>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 67 GFNNICEKFG*SSCEISSEAKPVCKC 144
GFN C+ S+CE+ + KP C C
Sbjct: 497 GFN--CDSPPYSTCEVQDDGKPACVC 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,152
Number of Sequences: 59808
Number of extensions: 346561
Number of successful extensions: 865
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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