Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30938X
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    59   3e-11
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    58   4e-11
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    56   3e-10
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    42   5e-06
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    29   0.024
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.041
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 58.8 bits (136), Expect = 3e-11
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
 Frame = +1

Query: 256 IGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DNAPEEKARGIT 390
           IGHVD GK+T T  +      ++          AQ+ G     YA + D    E+ RGIT
Sbjct: 13  IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 72

Query: 391 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
           I++A  +++T + +    D PGH D+IKNMITGT+Q D
Sbjct: 73  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 110


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 58.4 bits (135), Expect = 4e-11
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 15/98 (15%)
 Frame = +1

Query: 256 IGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DNAPEEKARGIT 390
           IGHVD GK+T T  +      ++          AQ+ G     YA + D    E+ RGIT
Sbjct: 13  IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 72

Query: 391 INVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
           I++A  +++T + +    D PGH D+IKNMITGT+Q D
Sbjct: 73  IDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQAD 110


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 55.6 bits (128), Expect = 3e-10
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +1

Query: 352 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
           +D    E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D
Sbjct: 3   LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 53


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 41.5 bits (93), Expect = 5e-06
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 394 NVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMD 504
           ++A  +++T + +    D PGH D+IKNMITGT+Q D
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 37


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 29.5 bits (63), Expect = 0.024
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 232 KAPLQCWQIGHVDHGKTTLTAAITKV--LSDLNLAQKKGYADIDNAPEEKARG 384
           +A +    IGHV HGK+T+  AI+ V  +   N  ++     +D   E+  RG
Sbjct: 40  QATINIGTIGHVAHGKSTIVKAISGVQTVRFKNELERNITIKLDTRAEDSTRG 92


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 0.041
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 256 IGHVDHGKTTLTAAI 300
           +GHVDHGKTTL  A+
Sbjct: 151 MGHVDHGKTTLLDAL 165


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 140 NVRNTTVLSGLTPLSIILK 196
           + R TT+ + +TPLS+ LK
Sbjct: 328 SARPTTIETRVTPLSLSLK 346


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 430 HYGHTDCPGHAD 465
           HYGH   PG  D
Sbjct: 280 HYGHHPDPGEVD 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,885
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)