Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30937X
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 92 2e-19
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 88 3e-18
12_02_0154 + 14494319-14495857 28 3.8
03_06_0712 - 35683814-35684065,35685296-35685466 27 5.1
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930 27 6.7
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 27 8.8
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 27 8.8
01_06_0826 - 32252546-32253208 27 8.8
01_06_0746 - 31636024-31641396 27 8.8
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 92.3 bits (219), Expect = 2e-19
Identities = 40/80 (50%), Positives = 64/80 (80%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 195
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 196 GSKKELAAVRTVCSHVENMI 255
G+++ +AA+RT SHV+N+I
Sbjct: 61 GTRRTMAAIRTAISHVQNLI 80
Score = 88.2 bits (209), Expect = 3e-18
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M GVT++ S K KD
Sbjct: 82 GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 141
Query: 438 E 440
E
Sbjct: 142 E 142
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 88.2 bits (209), Expect = 3e-18
Identities = 40/61 (65%), Positives = 47/61 (77%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M GVT++ S K KD
Sbjct: 75 GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134
Query: 438 E 440
E
Sbjct: 135 E 135
Score = 85.0 bits (201), Expect = 2e-17
Identities = 37/73 (50%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Frame = +1
Query: 46 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 216
++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +A
Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60
Query: 217 AVRTVCSHVENMI 255
A+RT SHV+N+I
Sbjct: 61 AIRTAISHVQNLI 73
>12_02_0154 + 14494319-14495857
Length = 512
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 106 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 273
P+ VL+ KH+ D+ + L ++E+ F +K+ L V H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303
>03_06_0712 - 35683814-35684065,35685296-35685466
Length = 140
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 115 VLKRNF-KHLAVDIRMVNPRLLKVE 186
VLKR+F + AVD+R +NP++ K E
Sbjct: 5 VLKRHFSRKRAVDVRRINPKVPKEE 29
>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
Length = 458
Score = 27.1 bits (57), Expect = 6.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 255
K ++ GP G +K K+ + +NPRL K+ + KKEL V S+V M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201
Query: 256 K 258
+
Sbjct: 202 E 202
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 46 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 153
VKI D T+ V +L+ V R LK + L +DI
Sbjct: 135 VKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI 170
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 52 IPDGLTVHVKSRLVTVKGPRGVLKRN 129
+P G T H +S + V+GPRG + N
Sbjct: 61 LPRGATSHRESGISAVRGPRGRIGEN 86
>01_06_0826 - 32252546-32253208
Length = 220
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 36 KSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLG 143
+ E ++ RRA+G E G PR Q+ L LG
Sbjct: 150 EEEREDLRRAFGAFEAVKGSGRITPRGLQRVLSQLG 185
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 271 ASNTRCVLCMLTSPLTVSPLRVIQLLRYVTSWVRNTSEG*RWHLV 405
A+NTR + + + + V P +V+ ++ ++ W+RN E W ++
Sbjct: 429 AANTRVLNYLEAAAVFVIP-QVLAIVLFIIPWIRNFLEKTNWKIL 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,158
Number of Sequences: 37544
Number of extensions: 263698
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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