Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30937X
(441 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 100 1e-21
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 3.0
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 3.0
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 3.0
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 3.9
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 27 5.2
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 27 6.9
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05) 27 6.9
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65) 27 6.9
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 27 9.1
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 99.5 bits (237), Expect = 1e-21
Identities = 44/80 (55%), Positives = 61/80 (76%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 198
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 199 SKKELAAVRTVCSHVENMIK 258
S+KELA V+T+ +H+ENMIK
Sbjct: 617 SRKELACVKTIITHIENMIK 636
Score = 78.2 bits (184), Expect = 3e-15
Identities = 32/49 (65%), Positives = 40/49 (81%)
Frame = +3
Query: 255 KGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 401
KGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 636 KGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 29.9 bits (64), Expect = 0.97
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 338 ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
+T+ D G VS H+THLV A S +++ F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 180 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 88
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 233 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 90
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 1 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 114
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 49 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 183
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 171 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 61
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 33 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 140
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 76 VKSRLVTVKGPRGVLKRNFKHL 141
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 27.5 bits (58), Expect = 5.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 302 SIHSTHLVLEAFSYSFIMF--STCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLK 129
S+ S HL L Y ++++ + C L +SFL P+H + R GF + A +
Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242
Query: 128 FLL 120
LL
Sbjct: 243 LLL 245
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 264 TKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 431
T+G MR + P + VTTE ++++ +GE+ + P T++ +P Q
Sbjct: 384 TRGDHVTMRGEHPTTPASSVTTEDKDLLQML-AVGEQGLANKGTVPQSTLITTPIQ 438
>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -2
Query: 287 HLVLEAFSYSFIMFSTCEQTVLTA---ASSFLDP 195
H + +F +FI S C+QT++T+ ASS DP
Sbjct: 161 HKGVSSFIANFIFVSPCQQTIITSHDMASSSEDP 194
>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
Length = 739
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -1
Query: 129 VPFENS-AGPFNCHQTRFHMD--RKPVW---DFDFLICYNLLH 19
+PF GP +C +TRF +D R P W D+ L+C +++
Sbjct: 6 IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYILLVCPTIVY 48
>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
Length = 861
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 249 HDKGVTKGFQYKMRAVYAHFPIN 317
H+ G+TKG Q K R V + PI+
Sbjct: 423 HEDGITKGRQQKSRQVSRNLPIH 445
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 129 VPFENS-AGPFNCHQTRFHMD--RKPVWDFDFLIC 34
+PF GP +C +TRF +D R P D+ L+C
Sbjct: 712 IPFNALIVGPTSCGKTRFIVDRLRGPFLDYIVLVC 746
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 26.6 bits (56), Expect = 9.1
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -3
Query: 394 IFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLSCSLHVNRLSSRR 215
IF+ + ++P+K + +I+ LP + + A L WKP L L + S
Sbjct: 18 IFSRVSGYTPRKRKTAILALPFLARPKWRPFGFVAFPLRWKPTERLLRRLLGLAARDSNN 77
Query: 214 QAPFWIRTISQPSGDEGLPC 155
+ I P GD PC
Sbjct: 78 TSVLPI----APGGDTADPC 93
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 171 TRVYHANVNSQVFEV-------PFENSAGPFNCHQTRFHMDRKP 61
TR YH NV VF V F S G + HQ + DR+P
Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,066,484
Number of Sequences: 59808
Number of extensions: 310993
Number of successful extensions: 854
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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