Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30937X
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 84 5e-17
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 83 8e-17
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 83 8e-17
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 28 2.4
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 5.6
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 5.6
At5g07320.1 68418.m00836 mitochondrial substrate carrier family ... 27 7.4
At2g34030.1 68415.m04166 calcium-binding EF hand family protein ... 27 7.4
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 27 7.4
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ... 27 7.4
At5g14850.2 68418.m01742 mannosyltransferase, putative similar t... 26 9.8
At5g14850.1 68418.m01741 mannosyltransferase, putative similar t... 26 9.8
At4g38010.1 68417.m05370 pentatricopeptide (PPR) repeat-containi... 26 9.8
At1g03320.1 68414.m00311 hypothetical protein 26 9.8
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 83.8 bits (198), Expect = 5e-17
Identities = 36/84 (42%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
+ WFGS+K A++RT SHV+N+I
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLI 84
Score = 81.0 bits (191), Expect = 3e-16
Identities = 38/61 (62%), Positives = 44/61 (72%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVT+GF Y+MR VYAHFPIN N IEIRNFLGEK +R+V+M GV +V S K KD
Sbjct: 86 GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145
Query: 438 E 440
E
Sbjct: 146 E 146
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 83.0 bits (196), Expect = 8e-17
Identities = 39/61 (63%), Positives = 45/61 (73%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K KD
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145
Query: 438 E 440
E
Sbjct: 146 E 146
Score = 80.2 bits (189), Expect = 6e-16
Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
+ WFG++K A++RT SHV+N+I
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLI 84
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 83.0 bits (196), Expect = 8e-17
Identities = 39/61 (63%), Positives = 45/61 (73%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 437
GVT+GF+YKMR VYAHFPIN IEIRNFLGEK +R+V+M GVT+V S K KD
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKD 145
Query: 438 E 440
E
Sbjct: 146 E 146
Score = 80.2 bits (189), Expect = 6e-16
Identities = 34/84 (40%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMI 255
+ WFG++K A++RT SHV+N+I
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLI 84
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 40 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 183
+++K+ DG VHV ++ + ++ +LK+N + +++ + P L V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 219 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 124
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 43 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 153
+VKI D T+ V +L+ V R LK + L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174
>At5g07320.1 68418.m00836 mitochondrial substrate carrier family
protein similar to peroxisomal Ca-dependent solute
carrier [Oryctolagus cuniculus] GI:2352427
(mitochondrial carrier superfamily); contains
INTERPRO:IPR001993 Mitochondrial substrate carrier
family, INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 479
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 40 QKVKIPDGLTVHVK-SRLVTVKGPRGVLKR 126
++ IPDG++ HVK SRL+ G G + R
Sbjct: 191 EQAVIPDGISKHVKRSRLLLAGGLAGAVSR 220
>At2g34030.1 68415.m04166 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 566
Score = 26.6 bits (56), Expect = 7.4
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 281 VLEAFSYSFIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPR 108
+L F +M ST ASSF+D N T F++ + C+ F + PR
Sbjct: 120 LLTMFPRIALMLSTGLSLSRDVASSFIDDNVGLTVGHTVFSLTIQWGACVVFSITGPR 177
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/57 (17%), Positives = 31/57 (54%)
Frame = +1
Query: 4 KQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRL 174
K+ + + + +++++ DG T+H K + + ++ +LK+ + +++ + P L
Sbjct: 198 KKDEDEAEEIETKEIELEDGETIHAKDKSLPLQTLIDILKQQTGNDNIEVGKIRPSL 254
>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 894
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 289 RILYWKPLVTPLSCSLHVNRLSSRRQAP 206
R +YW+PL P ++H+ + R+ P
Sbjct: 814 RSIYWQPLSFPCLKTIHITKCPELRKLP 841
>At5g14850.2 68418.m01742 mannosyltransferase, putative similar to
PIGB from Homo sapiens [gi:1552169], Mus musculus
[gi:7634741]
Length = 529
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -3
Query: 385 LLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLSCSLHVNRLSS 221
L ++ +P K++ I+E+ + + ++G R++Y ++ PL+ L N LSS
Sbjct: 227 LELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLN-FLKFNFLSS 280
>At5g14850.1 68418.m01741 mannosyltransferase, putative similar to
PIGB from Homo sapiens [gi:1552169], Mus musculus
[gi:7634741]
Length = 548
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -3
Query: 385 LLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLSCSLHVNRLSS 221
L ++ +P K++ I+E+ + + ++G R++Y ++ PL+ L N LSS
Sbjct: 227 LELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLN-FLKFNFLSS 280
>At4g38010.1 68417.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 559
Score = 26.2 bits (55), Expect = 9.8
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -2
Query: 392 LYPSDVFLTQEVTYLNN*ITLSGDTVN-GEVSIHSTHLVLEAFSYSFIM--FSTCEQTVL 222
L D+ + + VT+L S D + V +HS VL +FSY+ ++ ++ C++ +
Sbjct: 34 LLRDDLIINKVVTFLGK----SADFASYSSVILHSIRSVLSSFSYNTLLSSYAVCDKPRV 89
Query: 221 TAASSFLDPNHFSTFRRRGFTMRMST 144
T + + TF GF+ M T
Sbjct: 90 TIFA-------YKTFVSNGFSPDMFT 108
>At1g03320.1 68414.m00311 hypothetical protein
Length = 220
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 126 PFENSAGPFNCHQTRFHMDRKPV 58
P+ +AGPF QTR +MD P+
Sbjct: 183 PYMAAAGPFPYWQTRPYMDANPM 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,379,768
Number of Sequences: 28952
Number of extensions: 213410
Number of successful extensions: 553
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -