Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30936
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   120   2e-28
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   120   2e-28
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    29   0.43 
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   0.43 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.57 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.75 
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   3.0  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   4.0  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   5.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.3  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   5.3  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   7.0  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   9.2  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.2  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  120 bits (288), Expect = 2e-28
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R+RK   A+R GRH G
Sbjct: 61  FRIRKTHAAKRLGRHTG 77



 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 34/61 (55%), Positives = 46/61 (75%)
 Frame = +2

Query: 362 EIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK*RRHASAA 541
           +ID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +AR    R  A AA
Sbjct: 114 KIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDAR----RARAKAA 169

Query: 542 R 544
           R
Sbjct: 170 R 170



 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 219 HRST*KGSSLWLGKRRSTANARMPQKELWVQ 311
           H +   G     GKR+ TA ARMP   +W++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSTVVWMR 97


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  120 bits (288), Expect = 2e-28
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R+RK   A+R GRH G
Sbjct: 61  FRIRKTHAAKRLGRHTG 77



 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 34/61 (55%), Positives = 46/61 (75%)
 Frame = +2

Query: 362 EIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK*RRHASAA 541
           +ID+HLYH+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +AR    R  A AA
Sbjct: 114 KIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDAR----RARAKAA 169

Query: 542 R 544
           R
Sbjct: 170 R 170



 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 219 HRST*KGSSLWLGKRRSTANARMPQKELWVQ 311
           H +   G     GKR+ TA ARMP   +W++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSAVVWMR 97


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
 Frame = +2

Query: 326 KEIAPEVQNCQEEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQA-- 499
           K++A E+Q C+++++  LY  +  KAK    +++  L E    K+A+KA+T+   + A  
Sbjct: 90  KDLAEEIQGCEKKLE-SLYEEV-AKAKAKAVEDQLALEE--ADKEAKKAKTEAPVEAANK 145

Query: 500 EARAIK*RRHASAARNVLP 556
             R+ K     +A  N+ P
Sbjct: 146 SLRSRKKTPEIAAPANIEP 164


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 330 SLNPXAFVPIVPSVAYAHWLYFFSYQATVTTLSTCFCVFA 211
           SL+  ++VPI P   +++W    S QA VTT +T F +++
Sbjct: 132 SLSDISYVPI-PHKEHSNWPVHCSSQAIVTTSNTTFSIWS 170


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 165 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 76
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 144 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 49
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -2

Query: 517 LYCAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 392
           +Y   LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 319 VYTVQLSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 117
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -2

Query: 550 YVPRGACVPPSLYCAGLSLVAKHLRPGLLSLLPVDVLHEHTL--VLEHITLRLHVE*VV* 377
           Y+P+   +  S + AGLSL+A  L      L   + L + +    L   T+  +    V 
Sbjct: 344 YIPKTETLNDSQFAAGLSLLASELESQKNLLKKFENLKKKSSKDFLSPSTILSNAFSKVS 403

Query: 376 MPVNLFLAVLYFRSNFL 326
           +P +L L VL+F   F+
Sbjct: 404 LPNSLILRVLFFSLLFI 420


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 462 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 370
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 329 EIAPEVQNCQEEIDRHLYHSLYMKAKGNVFKNKRVL 436
           +I   V NC +EID  LY++L  K    V   + ++
Sbjct: 102 QIIARVVNCVKEIDDDLYNTLKEKLLSRVLDRESIV 137


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 339 GAISLNPXAFVPIVPSVAYAHWLYFFSYQATVTT 238
           G  ++N  AFVP++P+V   + + F + Q T ++
Sbjct: 102 GMNAMNAAAFVPMMPAVNLTNQVAFSAPQTTASS 135


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +1

Query: 82  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 228
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 229 RRKGR 243
           R+  R
Sbjct: 349 RKSLR 353


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 600 FVFSSEGLQQFLLLGGNTFLAALACLLHFIA 508
           +V   E   +FLLLG   F  A + LLH ++
Sbjct: 50  YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVS 80


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 136 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 252
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 25  SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 150
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,674
Number of Sequences: 5004
Number of extensions: 51542
Number of successful extensions: 171
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)