Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30936
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 122 2e-28
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 121 4e-28
07_03_1639 + 28305801-28305958,28306240-28306249 38 0.007
03_02_0050 + 5272471-5274861 30 1.8
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 2.4
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 29 3.1
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 29 3.1
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 4.1
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204... 28 5.4
04_03_0266 + 13648287-13649099,13649186-13649524 28 5.4
02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383 28 5.4
12_01_0210 - 1593732-1593823,1594730-1594773,1594895-1594983,159... 28 7.2
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 7.2
09_06_0281 + 22014394-22015534,22016041-22017056 28 7.2
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 7.2
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 9.5
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 9.5
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 122 bits (295), Expect = 2e-28
Identities = 54/77 (70%), Positives = 66/77 (85%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R R+ EA++KGRH G
Sbjct: 61 SRARRAHEAKQKGRHSG 77
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2
Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
++ID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ EA+ K
Sbjct: 113 KKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 219 HRST*KGSSLWLGKRRSTANARMPQKELWVQ 311
H + KG GKRR T AR+P K LW++
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 121 bits (292), Expect = 4e-28
Identities = 53/77 (68%), Positives = 66/77 (85%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R R+ EA++KGRH G
Sbjct: 61 SRARRAHEAKQKGRHSG 77
Score = 83.4 bits (197), Expect = 1e-16
Identities = 44/88 (50%), Positives = 56/88 (63%)
Frame = +2
Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK*RRHASA 538
++ID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ EA+ K AS
Sbjct: 113 KKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK--SKASR 170
Query: 539 ARNVLPPRRRNCCRPSLEKTKPRLPLRS 622
R + R P E P +P ++
Sbjct: 171 ERKIARRDERLAQGPR-EPAAPAVPAQT 197
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 219 HRST*KGSSLWLGKRRSTANARMPQKELWVQ 311
H + KG GKRR T AR+P K LW++
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMR 97
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 395 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
MK KGN+ NKR + +AEKAR + LSDQ EA+ K
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEAKLAK 41
>03_02_0050 + 5272471-5274861
Length = 796
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -2
Query: 562 SWRQYVPRGACVPPSLYCAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 410
++R+++ +C+P SL L +HL P LLS +P+D L H H +L H+
Sbjct: 82 AYRRHLSPPSCLP-SLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 141 VLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 10
VL G D D WI PH T +R C +L LEG DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560
>12_02_1042 + 25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +1
Query: 37 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 207
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 208 VRKNTEARRKGRHCGLVREEVQPMRVCHR 294
+ T RKGR G E + + ++
Sbjct: 806 DEETTSISRKGRAQGFGIEALDVLNFTYK 834
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +1
Query: 37 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 207
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 208 VRKNTEARRKGRHCGLVREEVQPMRVCHR 294
+ T RKGR G E + + ++
Sbjct: 757 DEETTSISRKGRAQGFGIEALDVLNFTYK 785
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 10 HRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 180
+RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 530 YRVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>05_01_0266 -
2040555-2040722,2041248-2041349,2041461-2041958,
2042372-2042479,2042559-2042753
Length = 356
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 308 TKAKGFKEIAPEVQNCQEEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKML 487
TKA+ +E ++Q C + D L S + + N ++Y H + + R+K+
Sbjct: 69 TKARSMEEEISKLQKCLNDKDEQLRSSTGCTEQMHFLNNYSNYVQYFH--ELDDLRSKLS 126
Query: 488 SDQAEARA 511
QA A A
Sbjct: 127 VTQATAEA 134
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 76 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 222
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>02_05_0279 - 27410659-27411635,27411793-27411933,27412035-27412383
Length = 488
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -3
Query: 591 SSEGLQQFLLLGGNTFLAALACLLHFIARASA---WSLSIFVLAFS 463
S + L+ F+L G LAA A FI A + ++IF+L FS
Sbjct: 147 SGDKLEPFILSGSLFLLAAAATFSRFIPTVKARFDYGVTIFILTFS 192
>12_01_0210 -
1593732-1593823,1594730-1594773,1594895-1594983,
1595076-1595120,1595457-1595564,1595647-1595732,
1595872-1595959,1596159-1596335,1596531-1596606,
1596709-1596758,1596834-1596896,1597152-1597254,
1597337-1597439,1597559-1597619,1598119-1598159,
1599790-1599961
Length = 465
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -3
Query: 603 GFVFSSEGLQQFLLLGGNTFLAALACLLHFIARASAWSLSIFVL-AFSAFFLWMYSMSTR 427
G FSSE + Q L + G + LA + H++ + +S+ + A S L Y T
Sbjct: 296 GLSFSSEDIGQVLAVAGASLLAYQLIIYHWVHKFLGPIISLRIASALSILILSTYPFMTY 355
Query: 426 LFLNTLPFAF 397
L L AF
Sbjct: 356 LSGAELSLAF 365
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 91 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 195
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 192 YCYRFLDDETILDHLTDVLSGVGVCDLID 106
Y YR DDE+++ H T +L+ + D++D
Sbjct: 657 YSYRSPDDESLVTHFTALLTQGNLGDILD 685
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 202 ARVRKNTEARRK 237
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 46 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 171
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 76 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 237
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,585
Number of Sequences: 37544
Number of extensions: 374024
Number of successful extensions: 1131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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