Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30936
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 29 4.2
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 5.6
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 5.6
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86) 28 5.6
SB_28648| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 7.4
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_30872| Best HMM Match : KID (HMM E-Value=4.7) 27 9.7
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 132 bits (320), Expect = 2e-31
Identities = 59/80 (73%), Positives = 70/80 (87%)
Frame = +1
Query: 13 RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 192
+V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP V
Sbjct: 26 KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85
Query: 193 HSRARVRKNTEARRKGRHCG 252
HSRARVRK EAR KGRH G
Sbjct: 86 HSRARVRKADEARSKGRHSG 105
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/53 (81%), Positives = 50/53 (94%)
Frame = +2
Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
++ID H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQAEAR K
Sbjct: 141 KKIDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNK 193
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 234 KGSSLWLGKRRSTANARMPQKELWVQ 311
KG GKR+ TANARMPQK +W++
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIWIR 125
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 127 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCGLVREEVQ 273
+S NIRK IKDG K P S +VRK + RR + V++ Q
Sbjct: 95 SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKKHEQ 145
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -3
Query: 570 FLLLGGNTFLAALAC 526
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 554 PPRRRNCCRPSLEKTKPRLPLRSK 625
PP +N +P ++KTKP PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
Length = 1578
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 351 FCTSGAISLNPXAFVPIV--PSVAYAHWLYFFSYQATVTTLSTCFCVFADTSAGVYCYRF 178
+CT I + P P V ++ + Q TV+T T F T+ G+Y
Sbjct: 236 YCTKSVIYVRPDEAATFGWDPHVVFSDNGIAYPRQVTVSTPDTAH--FVKTTVGLYKIEN 293
Query: 177 LDDETILDHLTDVL 136
++ I+ +TDVL
Sbjct: 294 AKEQVIVPEVTDVL 307
>SB_28648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 347 QNCQEEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHR---KKAEKARTKML 487
+NC + + L+ +++ + N + LMEY+HR ++A A T++L
Sbjct: 35 ENCSRHLLKELFCAIWSSSWFNKVGAPQKLMEYVHRYGNRQARLAATELL 84
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 467 KARTKMLSDQAEARAIK*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKH 628
K+R K S +E RRHAS++ PP+++ R +++ R P +S+H
Sbjct: 81 KSRKKRRSPSSEDEPAS-RRHASSSPEDSPPKKK---RKRRVESEERSPFKSRH 130
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/74 (22%), Positives = 28/74 (37%)
Frame = +2
Query: 362 EIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK*RRHASAA 541
E R Y +LY KGN F + L++ E+ R K + R+ +
Sbjct: 70 EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129
Query: 542 RNVLPPRRRNCCRP 583
+ + P R+ P
Sbjct: 130 KTICPKGRQKSTLP 143
>SB_30872| Best HMM Match : KID (HMM E-Value=4.7)
Length = 294
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 287 HTRIGC-TSSLTKPQ*RPFLRASVFLRTRARECTATGF 177
H ++ C T +TKP+ RPFL + + R AR T F
Sbjct: 62 HEKLECITLEITKPRSRPFLVCTWYRRPEARVETFAHF 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,845,236
Number of Sequences: 59808
Number of extensions: 411522
Number of successful extensions: 1333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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