Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30936
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   118   4e-27
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    32   0.30 
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    31   0.53 
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    27   8.6  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  118 bits (284), Expect = 4e-27
 Identities = 50/77 (64%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R R+  EARRKGRH G
Sbjct: 61  FRAREYEEARRKGRHTG 77



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 31/53 (58%), Positives = 42/53 (79%)
 Frame = +2

Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
           +++D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQA+AR  K
Sbjct: 113 KKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDK 165



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = +3

Query: 234 KGSSLWLGKRRSTANARMPQKELWVQ 311
           KG     GKRR TANARMP+K LW++
Sbjct: 72  KGRHTGYGKRRGTANARMPEKTLWIR 97


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -3

Query: 333 ISLNPXAFVPIVPSVAYAHWLY-FFSYQATVTTLSTCFCVFADTSAGVYCYRFLDDETIL 157
           I + P     IV    +  W   F ++   +  ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 156 DHLTDVLSGVGVCDLIDFI 100
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 118  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 252
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
 Frame = -3

Query: 570 FLLLGGNTFLAALACLLHFIARASAWSLSI--FVLAFSAFF--LWMYSMSTRL--FLNTL 409
           FL     T L    C L  + R  + +L I    L FS F    W Y + T +  F    
Sbjct: 46  FLANTSITQLGYCICFLLTVPRVISINLRIVNIYLGFSQFLGHWWSYMIFTTMLHFAVNS 105

Query: 408 PFAFM*SEWYRCLSISSWQFCTSGAISLNPXAFV 307
             + M S  +RC+S+ + +F TSGA ++   A++
Sbjct: 106 FLSIMLSMVFRCISLKTLRFPTSGAFAMCILAYM 139


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 521 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 625
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 363 SSWQFCTSGAISLNPXA--FVPIVPSVAYAHWLYF 265
           +S+++C    I L+P +  F+ +VP+     WLYF
Sbjct: 309 TSYKYCNEKLIKLDPFSNPFIKLVPTAIPGQWLYF 343


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 568 PPSWRQYVPRGACVPPSLYCAGLSL 494
           P SW QY P+G C+ P    A  S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 130 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 243
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 542 RNVLPPRRRNCCRPSLEKTKPRLP 613
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 300 VPSVAYAHWLYFFSYQATVTTLSTCFCVF 214
           +PS+  + WL+ F     + TL  C C++
Sbjct: 214 LPSILQSKWLWIFVIGIVLPTLCCCCCIY 242


>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 567 LLLGGNTFLAALACLLHFIARASAWSLSIFVLAFSAFFLWMYS 439
           +L  G TFL       HFIA     +  I VL  SA F + YS
Sbjct: 73  MLYVGTTFLPISKEFGHFIAAFYCSTFGICVLFLSAHFFYRYS 115


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 567 LLLGGNTFLAALACLLHFIARASAWSLSIFVLAFSAFFLWMYS 439
           +L  G TFL       HFIA     +  I VL  SA F + YS
Sbjct: 73  MLYVGTTFLPISKEFGHFIAAFYCSTFGICVLFLSAHFFYRYS 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,060
Number of Sequences: 27780
Number of extensions: 301711
Number of successful extensions: 970
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)