Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30936
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 118 4e-27
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 116 2e-26
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 115 3e-26
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 42 3e-04
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 29 3.4
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.4
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.0
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 6.0
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 27 7.9
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 118 bits (283), Expect = 4e-27
Identities = 52/77 (67%), Positives = 63/77 (81%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R R EA+RKGRH G
Sbjct: 61 SRARALNEAKRKGRHSG 77
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +2
Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
++IDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ EA+ IK
Sbjct: 113 KKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 234 KGSSLWLGKRRSTANARMPQKELWVQ 311
KG GKR+ T AR+P K LW++
Sbjct: 72 KGRHSGYGKRKGTREARLPTKILWMR 97
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 116 bits (278), Expect = 2e-26
Identities = 52/77 (67%), Positives = 63/77 (81%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R RK A+ KGRH G
Sbjct: 61 SRARKMKIAKMKGRHSG 77
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/53 (67%), Positives = 44/53 (83%)
Frame = +2
Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
++ID+H+YH +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ EA+ K
Sbjct: 113 KKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 234 KGSSLWLGKRRSTANARMPQKELWVQ 311
KG GKR+ T AR+P K LW++
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMR 97
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 115 bits (276), Expect = 3e-26
Identities = 50/77 (64%), Positives = 65/77 (84%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R R+ A+RKGRH G
Sbjct: 61 SRARQLNIAKRKGRHSG 77
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +2
Query: 359 EEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARAIK 517
++IDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ EA+ K
Sbjct: 113 KKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 234 KGSSLWLGKRRSTANARMPQKELWVQ 311
KG GKR+ T AR+P K LW++
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMR 97
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +2
Query: 359 EEIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 469
++ID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +2
Query: 329 EIAPEVQNCQEEIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEAR 508
+I+ E+Q Q+ I H+ S +K V + + + IH ++ T++ + + +
Sbjct: 436 DISNEIQEAQKTIQEHMSESEQLKESHGVKERELTGLRDIHETHQRESSTRLSELETQLK 495
Query: 509 AIK*R-RHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 625
++ R SA+ N +++ LE T +SK
Sbjct: 496 LLEQRVVDLSASLNAAEEEKKSLSSMILEITDELKQAQSK 535
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 495 WSLSIFVLAFSAFFLWMYSMSTRL 424
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 182 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 87
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 98 GSNHTFFLPHRITEAASLFCSLRELI 21
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 446 IHRKKAEKARTKMLSDQAEARAIK*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 616
+H +K EK + +A++ K + H S PP++RN C S + K L +
Sbjct: 603 VHNRKNEKRGIHLPQKRAKSPITKGKSHESP-----PPKKRNTCSVSSQTRKVSLKI 654
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,091
Number of Sequences: 28952
Number of extensions: 286010
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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