Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30933
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.7  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   8.7  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = +2

Query: 449 DAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSS 586
           D P+S + +  H    +++  S     +   +SP+ + P  + S S
Sbjct: 37  DTPLSFKNIESHLNAISQITNSTLDPGRKSPSSPRISSPSSTKSGS 82


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 330  YRPVRRHTLSRIDETPPQTLARPRSKSLQHSADDFSS 440
            Y+PV     + +  T  + +   R+++L H A +  S
Sbjct: 1238 YKPVSTDDKTEVKPTSQKIVPNLRNQNLSHQAKNLDS 1274


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 545  SPQYAEPKDSDSS 583
            +P YA P+D+D++
Sbjct: 2029 APMYAHPEDADAT 2041


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 539 SNSPQYAEPKDSDSSSYERPAS 604
           S+SP  + P+ S SS+   PA+
Sbjct: 37  SSSPSGSSPQHSSSSASTSPAA 58


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 539 SNSPQYAEPKDSDSSSYERPAS 604
           S+SP  + P+ S SS+   PA+
Sbjct: 37  SSSPSGSSPQHSSSSASTSPAA 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,850
Number of Sequences: 336
Number of extensions: 1689
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)