Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30933
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 30 0.33
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 28 1.3
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 27 2.3
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 3.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 4.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 4.0
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 7.1
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 7.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 9.3
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 9.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 9.3
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 269 RHIQLPPENQTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQES 412
R +P + T RQESLP Q R++++P+ PT Q +
Sbjct: 676 RKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQHT 723
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 266 TRHI--QLPPENQTTQADR-RQESLPPGQKAHPVPYRRDASPNAGPTSVQES 412
T+H+ + P Q T+ RQESLP Q R+++ P+ PT Q +
Sbjct: 704 TKHLRKESTPSKQPTEGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQHA 755
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 266 TRHIQ---LPPENQTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQE 409
T+H++ +P + T RQESLP Q R+++ P+ P+ Q+
Sbjct: 736 TKHLRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESIPSKQPSGGQQ 786
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 458 VSLQRVSGHEQ-ERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERPASMTD 613
+S +S H++ A + Q E+ + L S S + P +SDSSS E +S++D
Sbjct: 227 ISASDLSLHQEFVSASIVQQPELNSLLTSQSKN-STPSESDSSSSESSSSVSD 278
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 270 DTFNSHRKIKRPKLIGDKKVYRPVRRHTLSRIDETPPQTLARPRSKSLQHSADDF 434
D + R I RP+ + K+Y P R +LS ++ + ++ +K L + DD+
Sbjct: 66 DHISLARSITRPESASESKIYAPSARSSLS-LEAVVGKKVSAKFAKYLSQTDDDW 119
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +1
Query: 406 RVYSTLRMISRRRVRCSGLAPTCQRTRAGACPSATKSRDW*PAGEQQ 546
R+ M +R++RC G P C + P +R G++Q
Sbjct: 6 RIPRACDMCRKRKIRCDGKQPACSNCVSHGIPCVFTARPKRRTGQRQ 52
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 446 SDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERP 598
SD+ V L ++ Q+R + SHEI N+ SP+ EPK S+ ERP
Sbjct: 452 SDSSVPLSQLQKKSQQRNSV--SHEIQNRGTKGSPK--EPKAKPST--ERP 496
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 4.0
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +2
Query: 335 PGQKAHPVP-YRRDASPNAGPTSVQESTALCG*FLVDASDAPVSLQRVSGHEQERARLQQ 511
P P+P DAS + V++++ G F D + L+R GH Q+ R+ +
Sbjct: 237 PPLDMEPLPSISMDASDSVSEQLVKDASLPSGPFSTDYLENGSDLKRSLGHNQKSDRVSK 296
Query: 512 S---HEIGNQLESNSPQYAEPKDSDSSSY 589
N N+P + DS + Y
Sbjct: 297 DVSPQHQANPSTLNNPLKTQNFDSSKNLY 325
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 312 IGDKKVYRPVRRHTLSRIDETPPQTLARPRSKSLQ--HSADDFSS 440
I DKK +RP RH + + ++L + +S++ DDF++
Sbjct: 802 IPDKKFHRPFPRHLHRYVGRSASESLTSEKDESIKSMKGIDDFAN 846
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 393 RPRSKSLQHSADDFSSTRPMLRSRSNVSADTSRSVPVC 506
R + KSL+ ++ S+ +++SNV+ S P+C
Sbjct: 498 RKKQKSLKPDTENQESSVKNKKAKSNVNLQYSPKTPIC 535
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 336 PVRRHTLSRIDETPPQTLARPRSKSLQ-HSADDFSSTRP 449
PV+R T +I PP ++ P K +Q A+ SS P
Sbjct: 336 PVQRKTTPKIQRLPPSSIQIPPPKPMQKFPANAASSESP 374
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 429 DFSSTRPMLRSRSNVSADTSRSV 497
D SST+ +LRS S + DT R++
Sbjct: 849 DLSSTKSLLRSLSLIEDDTVRNI 871
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 485 EQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERPASMTD 613
E+ + + S E + ES+S +E DSDSSS S ++
Sbjct: 192 EKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSE 234
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 267 LDTFNSHRKIKRPKLIGDKKVYRPVRRHTLSRIDETPPQTLARPRSKSLQHS 422
LD+ + ++RP LI K V + I + PP + RP + ++QH+
Sbjct: 360 LDSQPNSSPVRRPSLIKVKTASTSVLP---TSILQRPPSIVPRPETAAIQHT 408
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 539 SNSPQYAEPKDSDSSSYERPASMTDLPIMVP 631
S PQ K+ DS E A LPI +P
Sbjct: 1304 SKQPQRRHRKEKDSKVSESTAEFKSLPIDIP 1334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,888,111
Number of Sequences: 5004
Number of extensions: 29374
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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