Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30933
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 32 0.45
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 29 3.2
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 29 3.2
08_01_0901 - 8873905-8874076,8874674-8874786,8875388-8875522,887... 29 4.2
06_03_1358 - 29548440-29549315 28 5.5
12_02_1201 - 26946817-26947350 28 7.3
04_04_0057 + 22410167-22411330 28 7.3
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 27 9.7
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246... 27 9.7
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 257 PLLTRHIQLPPENQTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQE 409
P LT I PPE ++ + + S PP +++ P P +P + P S +E
Sbjct: 883 PTLTPEISPPPEGKSPPSHTPESSSPPSKESEPPP---TPTPKSSPPSHEE 930
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 245 VQPLPLLTRHIQLPPENQTTQADRRQES-LPPGQKAHPVPYRRDASPNAGPTSV 403
V+PLP + LPP Q + +E+ PP +++ P P +P A T+V
Sbjct: 1325 VKPLPPPVPQVSLPPPKQESLPPPAKEAEAPPAKESKPPPAMEAEAPPAFDTTV 1378
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 473 VSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERPASMTD 613
+ GHE LQ+ N L+S +PQ E D+D S E M +
Sbjct: 609 IGGHESHSTELQERL---NALKSKNPQLDEALDADIDSMEEDTHMDE 652
>03_06_0209 - 32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +2
Query: 416 ALCG*FLVDASDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYER 595
ALC FL+ SD P+S + S E + + + + + S S A+P SSS +
Sbjct: 1070 ALCDLFLLPESDHPMSAAQ-SATEDDDEVARAAMPLCSFYASTSLPVAKPHSLPSSSSSK 1128
Query: 596 PASMTDLP 619
P + T P
Sbjct: 1129 PYTATPAP 1136
>08_01_0901 -
8873905-8874076,8874674-8874786,8875388-8875522,
8875661-8875792,8876136-8876301,8877154-8877248,
8878983-8879104,8879283-8879403,8879556-8879633,
8879730-8879991,8880196-8880366,8881070-8881710
Length = 735
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 257 PLLTRHIQLPPENQTTQADRRQESLPPGQKAHPVPYRRDASPN-AGPTSVQESTALC 424
P L R ++L +T+ +L P P+P R+D N G V+E +C
Sbjct: 88 PALLRRLRLAGGGASTRLVASNHTLFPSPAVDPLPERQDTVVNYGGEEGVEEKALVC 144
>06_03_1358 - 29548440-29549315
Length = 291
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 287 PENQTTQADRRQESLPPGQKAHPVP 361
PE+ +A ++ S PP +AHP P
Sbjct: 109 PEDAAKEAQEKENSSPPPSQAHPPP 133
>12_02_1201 - 26946817-26947350
Length = 177
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 408 SWTEVGPAFGEASRLYG-TGCAF*PGGRLSC 319
+WT PA + R++G TGC+F GR SC
Sbjct: 57 TWTINVPAGTSSGRVWGRTGCSFDGSGRGSC 87
>04_04_0057 + 22410167-22411330
Length = 387
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 440 DASDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERPASMTD 613
D + V L+ + E+ ARL +SH G+ L +++ AE D + + P + D
Sbjct: 232 DRKEEAVELEMLRS-ERRAARLPRSHSTGHSLVASAAAAAESGDHERFTLRLPQHVRD 288
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +2
Query: 392 PTSVQESTALC-----G*FLVDASDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQY 556
P +Q S A C G F+ DAPVSL+ +G ++E A + +H I +Q + +Y
Sbjct: 409 PDHLQVSNADCAHLTFGSFVSGTLDAPVSLKTANG-DEEVAAVSDNHSI-DQSDVRIHEY 466
Query: 557 AEPKDSDSSSYERPASMT 610
++ E AS T
Sbjct: 467 ENKDTVAPAADEHVASST 484
>02_05_1221 -
35023734-35023868,35024002-35024217,35024349-35024675,
35024845-35025218,35025560-35025647,35025767-35025910,
35026053-35026178,35026264-35026412,35026539-35026644,
35026757-35026900,35027018-35027194,35027304-35027453,
35027570-35027788
Length = 784
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 333 RPVRRHTLSRIDETPPQTLARPRSKSLQHSADDFSSTR 446
RP RR + P + PRS+S + +D SSTR
Sbjct: 37 RPSRRVLAVATEPKPSASAPAPRSRSRTRTPNDISSTR 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,856,886
Number of Sequences: 37544
Number of extensions: 247860
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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