Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30933
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10485| Best HMM Match : DUF1033 (HMM E-Value=0.19) 33 0.20
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 30 1.4
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 29 3.2
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09) 28 5.7
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 5.7
SB_11071| Best HMM Match : zf-MYM (HMM E-Value=5.2) 28 5.7
SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9) 25 6.8
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023) 28 7.5
SB_49244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 27 9.9
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 27 9.9
SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27) 27 9.9
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 27 9.9
>SB_10485| Best HMM Match : DUF1033 (HMM E-Value=0.19)
Length = 294
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 440 DASDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQ 553
D + P+SLQ +SG QE L+ +H N LE PQ
Sbjct: 210 DGNGLPISLQVMSGWWQEHKMLRVAHACENVLEKKQPQ 247
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 31.5 bits (68), Expect = 0.61
Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Frame = +2
Query: 251 PLPLLTRHIQLPPENQTTQADRRQESLPP-GQKAHPVPYRRDASPNAGPTSVQESTALCG 427
P P + +QLP +++ PP Q P R P + P+S+ + G
Sbjct: 567 PSPQMQEPMQLPTSQPGGFPPQQRPGAPPTSQPGGFPPQRPGMPPMSQPSSMHMQPS--G 624
Query: 428 *FLVDASDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERP 598
A P R H+Q +++Q H +Q + N+PQ S S+ P
Sbjct: 625 QPQSTAPQQPSQPLRPHPHQQMNSQMQNLHITSSQAQPNAPQMQGWSGSSSAQMLPP 681
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 363 IDETPPQTLARPRS-KSLQHSADDFSSTRPMLRS 461
+ +TP + AR + S + SA DF+S+ PMLRS
Sbjct: 3197 VQDTPEKCAARSKDGPSAKRSAPDFTSSLPMLRS 3230
>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 336 PVRRHTLSRIDETPPQTLARPRSKSLQHSADDFSSTRPMLRSRSNVSADTSRS 494
P +RH R + PP+ + R S S D FSS+ S S+ +D+ S
Sbjct: 730 PTKRHGSGRFKDLPPRKIRRDNS-----SHDSFSSSSSCCFSSSSFDSDSQES 777
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 29.1 bits (62), Expect = 3.2
Identities = 32/117 (27%), Positives = 44/117 (37%)
Frame = +2
Query: 251 PLPLLTRHIQLPPENQTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQESTALCG* 430
P+ R Q Q T DRR++S PP R+D + PT S
Sbjct: 387 PMEEERRQSQRATSKQRTNPDRRRKSSPPSASEKDRNQRKDKAKRE-PTPESSS------ 439
Query: 431 FLVDASDAPVSLQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERPA 601
D+SD S SG E E +S E ++ S+ + + D DS PA
Sbjct: 440 ---DSSD-DSSNDSDSGSESEDESSSESAEENTKISSSVKKGLQNGDIDSKPRPSPA 492
>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
Length = 564
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 245 VQPLPLLTRHIQLPP--ENQTTQADRRQESLPPGQKAHPVP 361
+ P PL TR PP T D R ++ PG HP P
Sbjct: 247 MHPTPLDTRVTDGPPGLPLHPTPLDTRSRTIAPGSPMHPTP 287
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 299 TTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQESTAL 421
T A R + S PG + DASP G V++ T +
Sbjct: 643 TQGAHREESSKTPGVAKRAIKITEDASPTTGTNGVRQKTTV 683
>SB_11071| Best HMM Match : zf-MYM (HMM E-Value=5.2)
Length = 529
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +1
Query: 352 PCPV*TRRLPKRWPDLGPRVYSTLRMISRRRVR-----CSGLAPTCQRTRAGACPSATKS 516
PC ++L + PRVY L ++SR +V CS AP C+ C S
Sbjct: 369 PCVQAYQKLYREEFSASPRVYKFLSIVSRYQVHVQHDFCSRNAPPCKDMTCQICTFINNS 428
Query: 517 R 519
R
Sbjct: 429 R 429
>SB_11167| Best HMM Match : Mucin (HMM E-Value=4.9)
Length = 297
Score = 25.4 bits (53), Expect(2) = 6.8
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 257 PLLTRHIQLPPENQTTQADRRQESLPPGQKAHP-VPYRRDASPNAGPTSVQEST 415
P L + Q+PP QT + PP + P PY P+A P+ S+
Sbjct: 197 PSLQPYSQMPPVEQTPPYPTDSLAYPPWDLSQPEPPYPLVDQPSAPPSQEAASS 250
Score = 21.0 bits (42), Expect(2) = 6.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 527 NQLESNSPQYAEPKDSDSSSYERPASMTDLPIMV 628
+Q ++SP Y P S S+Y T P +V
Sbjct: 244 SQEAASSPPYHPPSPSQDSAYPGLVFSTASPPLV 277
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 251 PLPLLTRHIQLPPENQTTQADRRQESLPPGQKA---HPVPYRRDASPNAGPTS 400
PLP TRHI+ P ++ R +S+P +PVP R A P P++
Sbjct: 1905 PLPYRTRHIRSPSPSRDPVPTRFTKSVPVRTSFPTWNPVP-SRTADPKISPST 1956
>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
Length = 1169
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 LLTRH-IQLPPENQTTQA-DRRQESLPPGQKAHPVPYRRDASPNAGPTSV 403
++ +H +QL + TT A DRR PP PV +D SP GP V
Sbjct: 973 VINKHCVQLLQDVATTSAGDRRNIQQPPQALLKPVS-AQDLSPGQGPARV 1021
>SB_49244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 325 FLSPIS-LGRLIFRWELNVSSEEWERLY 245
F SP+S GR WE ++ +E W+++Y
Sbjct: 352 FQSPVSGKGRTYEEWERDLVAERWQQIY 379
>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 372 TPPQTLARPRSKSLQHSADDFSSTRP--MLRSRSNVSADTSRSVPVCNKVTRLVTSW 536
TP Q K +A+ +S P +LR RS T +V CN TR ++SW
Sbjct: 224 TPEQVACNAYQKLPYPTANGCNSCDPTSLLRERSPAYLRTWCTVSSCNCSTRTLSSW 280
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 464 LQRVSGHEQERARLQQSHEIGNQLESNSPQYAEPKDSDSSSYERPAS 604
+QRVS EQE+ SH+ G++ E + K + S S ER ++
Sbjct: 477 MQRVSDTEQEKKARDSSHDSGSEYERKK----KKKKNRSESQERASA 519
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +3
Query: 390 ARPRSKSLQHSADDFSSTRPMLRSRSNVSADTSRSV 497
++P+ S HS DD + P +R++ + S+ ++++
Sbjct: 841 SKPQQASQSHSLDDLNRQNPAIRTKPDKSSKLNKTI 876
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 449 DAPVSLQRVSGHEQERARLQ-QSHEIGNQLESNSPQYAEPKDSDSSSYERP 598
D S RV + ERA ++ H + ++S +A P+D S SY+ P
Sbjct: 1282 DTYASNGRVEFLDYERASMEINGHSYRYTVSNHSGNFATPQDLSSDSYKDP 1332
>SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)
Length = 888
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 357 SRIDETPPQTLARPRSKSLQHSADDFSSTRPMLRSRSNVSADTSRSVPVCNKVTR 521
S I + PP+ P + + SS++P+ ++ NVS +S P C R
Sbjct: 145 SSIGQEPPEP---PAVVQILEDEAESSSSKPLNKNTQNVSMQSSTRNPFCKSTAR 196
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 449 DAPVSLQRVSGHEQERARLQ-QSHEIGNQLESNSPQYAEPKDSDSSSYERP 598
D S RV + ERA ++ H + ++S +A P+D S SY+ P
Sbjct: 679 DTYASNGRVEFLDYERASMEINGHSYRYTVSNHSGNFATPQDLSSDSYKDP 729
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,088
Number of Sequences: 59808
Number of extensions: 250621
Number of successful extensions: 1068
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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