Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30933
(644 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22720.3 68415.m02692 expressed protein 32 0.28
At2g22720.2 68415.m02691 expressed protein 32 0.28
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 32 0.37
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 29 2.0
At4g26630.1 68417.m03837 expressed protein 29 2.6
At3g22380.1 68416.m02825 expressed protein 29 3.5
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa... 28 4.6
At2g36290.1 68415.m04453 hydrolase, alpha/beta fold family prote... 28 4.6
At5g20150.1 68418.m02398 SPX (SYG1/Pho81/XPR1) domain-containing... 28 6.1
At3g14075.1 68416.m01778 lipase class 3 family protein low simil... 28 6.1
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 28 6.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 6.1
At1g15780.1 68414.m01893 expressed protein 28 6.1
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 28 6.1
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 24 6.7
At5g35390.1 68418.m04206 leucine-rich repeat transmembrane prote... 27 8.1
At4g25840.1 68417.m03717 haloacid dehalogenase-like hydrolase fa... 27 8.1
At2g22720.1 68415.m02693 expressed protein 27 8.1
At1g71850.1 68414.m08303 expressed protein ; expression supporte... 27 8.1
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 32.3 bits (70), Expect = 0.28
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Frame = +2
Query: 296 QTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQESTALCG*FLVDASDAPVSLQRV 475
+T + R+E P H P + N S S S P S
Sbjct: 202 RTAHSPHREEKRPVSANGHSRPSSSGSQMNHSRPSSSGSKMNHSRPATSGSQMPNSRPAS 261
Query: 476 SGHEQERARLQQSHE---IGNQLESNSPQYAEPKDSDSSSYERPAS 604
SG + + + S G+Q++++ PQ + P + S +RPAS
Sbjct: 262 SGSQMQSRAVSGSGRPASSGSQMQNSRPQNSRPASAGSQMQQRPAS 307
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 32.3 bits (70), Expect = 0.28
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Frame = +2
Query: 296 QTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQESTALCG*FLVDASDAPVSLQRV 475
+T + R+E P H P + N S S S P S
Sbjct: 305 RTAHSPHREEKRPVSANGHSRPSSSGSQMNHSRPSSSGSKMNHSRPATSGSQMPNSRPAS 364
Query: 476 SGHEQERARLQQSHE---IGNQLESNSPQYAEPKDSDSSSYERPAS 604
SG + + + S G+Q++++ PQ + P + S +RPAS
Sbjct: 365 SGSQMQSRAVSGSGRPASSGSQMQNSRPQNSRPASAGSQMQQRPAS 410
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +2
Query: 329 LPPGQKAHPVPYRRDASPNAGPTSVQESTALCG*FLVDASDAPVSLQRVSGHEQERARLQ 508
+ P + P P+ + PNA ++ L FLVD+ + + H+ + ++
Sbjct: 73 IDPNDQLLPDPWSKSTIPNAKSELLENFPFLDNMFLVDSEAESLLDHEIRNHKSSKEQIT 132
Query: 509 QSHE---IGNQLESNSPQYA 559
Q ++ QLE NS +Y+
Sbjct: 133 QDYKNLTSKAQLEENSDEYS 152
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 342 RRHTLSRIDETPPQTLARPRSKSLQHSA-DDFSSTRPMLRSRSNVSADTSRSVPV 503
++H + PPQ +RP QHS+ FSS L S S+ A +S S+P+
Sbjct: 80 QQHLSQPLVRPPPQAYSRPWQ---QHSSYTHFSSASSPLLSSSSAPASSSSSLPI 131
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 372 TPPQTLARPRSKSLQHSADDFSSTRPMLRSRSNVSADTSRSVPVCNK 512
+PP+ + + RS + + DD S T P S+ S + ++ P +K
Sbjct: 613 SPPEKITQKRSSAKRKKTDDDSDTSPKASSKRKKSENPIKASPAPSK 659
>At3g22380.1 68416.m02825 expressed protein
Length = 1550
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 245 VQPLPLLTRHIQLPPENQTTQADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQE 409
V P +L P + ++ + ++ LP G K P+P + +S + P +VQ+
Sbjct: 252 VSPASILASPSPPAPTSPSSSSISVRKKLPSGTKQKPLPPKSSSSKLSSPVAVQD 306
>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
family protein contains Pfam domain PF00149: Ser/Thr
protein phosphatase
Length = 474
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 375 PPQTLARPRSKSLQHSADDFSSTRPMLRSRSNVSADTSRSVPVC-NKVTRLVTSW 536
P + L R SL+ +DD P LR R NVS+D + + + T + SW
Sbjct: 29 PFKPLTRRFEPSLRRGSDDLPMDHPRLRKR-NVSSDFPEQIALALSTPTSMWVSW 82
>At2g36290.1 68415.m04453 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
[Rhodococcus sp. RHA1] GI:8978311; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 364
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 404 GPRSGQRLGRRLVYTGQGVPSDRAVDFLV 318
GPR R GR+L Y GVP D A ++
Sbjct: 55 GPRIKLRDGRQLAYKEHGVPRDEATHKII 83
>At5g20150.1 68418.m02398 SPX (SYG1/Pho81/XPR1) domain-containing
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profile PF03105: SPX domain
Length = 256
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 270 DTFNSHRKIK-RPKLIGDKKVYRPVRRHTLSRIDE 371
D F S++++K R KLIG K RPV+R R+DE
Sbjct: 20 DKFLSYKELKKRLKLIGSKTADRPVKR---LRLDE 51
>At3g14075.1 68416.m01778 lipase class 3 family protein low
similarity to calmodulin-binding heat-shock protein
CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
region
Length = 642
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 PPENQTTQADRRQESLPPGQKAHPVPYRRDA-SPN 385
PPE+QT + + LP G+ H V R +A PN
Sbjct: 539 PPESQTAEMKESRRFLPAGKIMHIVTVRPEAVEPN 573
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 482 HEQERARLQQSHE-IGNQLESNSPQYAEPKDSDS 580
H ++RARL+Q+ + S+SP+Y KDSD+
Sbjct: 61 HRRDRARLKQADDQYLFPKSSSSPEYPSHKDSDN 94
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 506 QQSHEIGNQLESNSPQYAEPKDSDSSSYERP 598
+ HE+ Q ES PQ ++P+DS +P
Sbjct: 449 ENKHELPKQKESPKPQPSKPEDSPKPEQPKP 479
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/54 (24%), Positives = 32/54 (59%)
Frame = +3
Query: 306 KLIGDKKVYRPVRRHTLSRIDETPPQTLARPRSKSLQHSADDFSSTRPMLRSRS 467
++IG ++RP + ++ ++ Q + +P+S+++Q + D + T P ++S S
Sbjct: 675 QIIGFLNMHRPRKPVQQGQLPQSQMQPMQQPQSQTVQDQSHD-NQTNPQMQSMS 727
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 509 QSHEIGNQLESNSPQYAEPKDSDSSSYERPAS 604
Q EI +Q+E+ SP+ +P D S E PAS
Sbjct: 667 QEGEIPSQVENESPKDLDPWDLPGSLVEDPAS 698
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 308 ADRRQESLPPGQKAHPVPYRRDASPNAGPTSVQESTAL 421
A + + LPP QK H V P+ G + S A+
Sbjct: 16 ATQTADDLPPSQKPHSVLLEHLPKPSGGGKASGASNAV 53
Score = 22.2 bits (45), Expect(2) = 6.7
Identities = 8/38 (21%), Positives = 18/38 (47%)
Frame = +2
Query: 524 GNQLESNSPQYAEPKDSDSSSYERPASMTDLPIMVPID 637
G ++++ + +P D + S E P + + P+D
Sbjct: 78 GKLIDTDGDYHIDPNDPNYDSGEEPFELVGATLSDPLD 115
>At5g35390.1 68418.m04206 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 657
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 249 NLSHSSLD-TFNSHRKIKRPKLI-GDKKVY-RPVRRHTLSRIDETPPQTLARPRSKS 410
NLS+++L + PK+ G+K +Y +P+ S E PPQ+ ARP+S S
Sbjct: 197 NLSNNALTGPIPESLSMTDPKVFEGNKGLYGKPLETECDSPYIEHPPQSEARPKSSS 253
>At4g25840.1 68417.m03717 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|Q08623 GS1 protein
{Homo sapiens}; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 298
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 639 WSM-GTMMGRSVIEAGRSYEDES 574
WS+ MMGR IEA R + DES
Sbjct: 106 WSLKAKMMGRKAIEAARLFVDES 128
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 524 GNQLESNSPQYAEPKDSDSSSYERPAS 604
G+Q++++ PQ + P + S +RPAS
Sbjct: 52 GSQMQNSRPQNSRPASAGSQMQQRPAS 78
>At1g71850.1 68414.m08303 expressed protein ; expression supported
by MPSS
Length = 470
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 321 KKVYRPV--RRHTLSRI---DETPPQTLARPRSKSLQHSADDFSSTRPMLRSRSNVSADT 485
K ++R + RRH+ R T R + L H+ + + RP+L + + ++
Sbjct: 2 KSIFRSISIRRHSGHRTFADTSAVEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEP 61
Query: 486 SRSVPV 503
++SVP+
Sbjct: 62 AKSVPI 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,098
Number of Sequences: 28952
Number of extensions: 173835
Number of successful extensions: 780
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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