Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30932
(499 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 109 4e-23
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 105 7e-22
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 99 6e-20
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 97 3e-19
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 95 6e-19
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 69 4e-11
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 57 2e-07
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 55 1e-06
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 53 3e-06
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 51 2e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 44 0.002
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 39 0.072
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 38 0.17
UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1; Flavobacteri... 34 2.0
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 33 3.6
UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum... 32 6.2
UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 32 8.2
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 109 bits (261), Expect = 4e-23
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 195
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 196 FHFRKNKNFCPVLNLDKLWT 255
+H ++N++FCP +NLDKLWT
Sbjct: 61 YHLKRNQSFCPTVNLDKLWT 80
Score = 51.2 bits (117), Expect = 1e-05
Identities = 31/88 (35%), Positives = 40/88 (45%)
Frame = +3
Query: 195 FPL*KEQEFLSSFELR*ALDLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 374
+ L + Q F + L LVSEQTR+ A G P+I++V++ PKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 375 PVIVXXXXXXXXXXXXXXDVGGACVLSA 458
PVIV VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 105 bits (251), Expect = 7e-22
Identities = 47/80 (58%), Positives = 53/80 (66%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 195
MAT+ KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 196 FHFRKNKNFCPVLNLDKLWT 255
FH +NK FCP++NLDKLW+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWS 80
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 98.7 bits (235), Expect = 6e-20
Identities = 43/78 (55%), Positives = 49/78 (62%)
Frame = +1
Query: 22 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 201
T K RK RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+FH
Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113
Query: 202 FRKNKNFCPVLNLDKLWT 255
KN+ CP +N+DKLWT
Sbjct: 114 KLKNQTVCPTINIDKLWT 131
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 96.7 bits (230), Expect = 3e-19
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +1
Query: 115 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 255
NAGG+HHHRIN DKYHPGYFGK+GMRNFH RKN +CP +NLDKLW+
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWS 66
Score = 50.4 bits (115), Expect = 2e-05
Identities = 30/68 (44%), Positives = 34/68 (50%)
Frame = +3
Query: 255 LVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDV 434
LVSE+TR YA D K PVI++VKA PKQPVIV V
Sbjct: 67 LVSEKTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGV 125
Query: 435 GGACVLSA 458
GGAC+L A
Sbjct: 126 GGACILVA 133
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 95.5 bits (227), Expect = 6e-19
Identities = 44/82 (53%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYHPGYFGKLGM 189
M + KKTRKLRGHVS AGG HHHRI M+K+HPGY+GKLGM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 190 RNFHFRKNKNFCPVLNLDKLWT 255
R FH +KN CPV+N+DKLW+
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWS 82
Score = 46.0 bits (104), Expect = 5e-04
Identities = 28/68 (41%), Positives = 33/68 (48%)
Frame = +3
Query: 255 LVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDV 434
LVS+ TR KYA KVPVI++ KA P QPV+V V
Sbjct: 83 LVSDATRQKYAEDKK-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAV 141
Query: 435 GGACVLSA 458
GGACVL+A
Sbjct: 142 GGACVLTA 149
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 69.3 bits (162), Expect = 4e-11
Identities = 32/78 (41%), Positives = 43/78 (55%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 195
M T +++RK RGHVS N+GG+HHH+I +KYH +FGK GMR
Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60
Query: 196 FHFRKNKNFCPVLNLDKL 249
+ K NF +NLDK+
Sbjct: 61 YRKLKQNNFNKSINLDKI 78
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 57.2 bits (132), Expect = 2e-07
Identities = 28/79 (35%), Positives = 39/79 (49%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 195
M KKTRKLRGHVS AGG H + ++HP Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 196 FHFRKNKNFCPVLNLDKLW 252
+H ++N ++ ++ +LW
Sbjct: 61 YHRKENSDYARPISSARLW 79
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 54.8 bits (126), Expect = 1e-06
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +1
Query: 151 DKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 255
DK+HPG FGK+GMR+FH + K CP++++DKLW+
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWS 62
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 53.2 bits (122), Expect = 3e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +1
Query: 124 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWT 255
G ++ + YFGK+GMR+FH +N +F PV+NLDKLWT
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWT 120
Score = 52.4 bits (120), Expect = 5e-06
Identities = 25/50 (50%), Positives = 26/50 (52%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 165
M T KTRK RGHVS AGG+HHHR NMDKYHP
Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 195
M T KK+RK+RG S +GG+HHH+I ++Y YF K GMR
Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60
Query: 196 FHFRKNKN 219
++ K N
Sbjct: 61 YNLEKTLN 68
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 44.0 bits (99), Expect = 0.002
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 189
M TS+KKTR LR HVS H R + PG G +GM
Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39
Query: 190 RNFHFRKNKNFCPVLNLDKLWT 255
R FH +NK +C ++NLDKLW+
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWS 61
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 38.7 bits (86), Expect = 0.072
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +1
Query: 16 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 168
M+ +KTRK +GHVS NAGGEH HRIN PG
Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 37.5 bits (83), Expect = 0.17
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 252 PKLI*VQNWTEILVLSKVEISHTKFAKVSRMVLVHVDXXXXXXXXXXXXXXXXXVLSDTT 73
P+ + VQ+W + L VE+SHT +++ MV +HV+ VL+DTT
Sbjct: 74 PQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLTDTT 133
Query: 72 MS 67
+
Sbjct: 134 FT 135
>UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
lipoprotein - Flavobacteriales bacterium HTCC2170
Length = 535
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 448 TQAPPTSLIFFSADFEKNFAFTMTGCLGSLPL 353
T A SL FFS D + N A T GCLG+ P+
Sbjct: 306 TDAEGNSLYFFSLDTKDNSACTSAGCLGAWPV 337
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 33.1 bits (72), Expect = 3.6
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 150 GQVPSWILWQTWYEKFPL*KEQEFLSSFEL 239
GQ+P WILW W + L EQ+ +SS +L
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871
>UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L15 - Cenarchaeum
symbiosum
Length = 138
Score = 32.3 bits (70), Expect = 6.2
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 MATSKKKTRKLRG-HVSXXXXXXXXXXXXXXXXXNAGGE-HHHRINMDKYHPGYFGKLGM 189
MAT +KTRKLRG G+ HH +M K PG+FG
Sbjct: 1 MATRNRKTRKLRGSRTHGWGQVGQHRASGHKGGVGVSGQLKHHFSSMLKEDPGHFGHDST 60
Query: 190 RNFHFRKNKNFCPVLNLDKLWT 255
H K + V +LD T
Sbjct: 61 HPPHSNAAKKWASVRDLDDFHT 82
>UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 306
Score = 31.9 bits (69), Expect = 8.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 223 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 86
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,967,307
Number of Sequences: 1657284
Number of extensions: 8235850
Number of successful extensions: 19241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19223
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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