Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30931
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   5.6  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   7.4  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   9.7  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.7  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -2

Query: 531 YC*CPENISR*SGFECNKNEIICKSKNYMITF 436
           YC CP+         C+  +  CK+  Y+ ++
Sbjct: 64  YCDCPDGSDEPGTSACHNGKFFCKNTGYISSY 95


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 399 CFHEILRHAPSLCSNTQIYDVIINRQY 319
           C+  +L HA S+CS     DV+ + QY
Sbjct: 157 CYLFLLGHAKSICSAAVRLDVLTSFQY 183


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 497 DYRLMFSGH*QYQENVDEFTVHLLLSGYC 583
           D R M +G   +QE  D++++HL ++  C
Sbjct: 327 DMRSMLAGLSDFQELRDQYSLHLTMAQEC 355


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 454 FAF-AYNLIFVAFEAGLSTYVFRTLTIPREC 543
           F+F +Y+L F   E G+  YV R LT  R C
Sbjct: 21  FSFPSYDLSFNETEHGVFCYVSRPLTKERSC 51


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 131 FCCCLKHYKLTDSIDS 178
           +C CL HYKL D  +S
Sbjct: 369 YCLCLAHYKLGDYEES 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,355
Number of Sequences: 5004
Number of extensions: 44975
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)