Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30931
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13700| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 

>SB_13700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = -2

Query: 552 NSSTFSWYC*CPENISR*SGFECNKNEIICKSKNYMITFKNTVELQLEIFYCFHEILRHA 373
           N +  S+ C  P+N+    G +C KN  IC   ++  +   T E    +      I    
Sbjct: 249 NDADVSYRCYNPDNVDDRFGIQCTKNGKICPRNSHFPSEGGTFENNALVCKFMKVIYIIR 308

Query: 372 PSLCSNTQIYDVIINRQYFE 313
           P+L    +I+DV I   Y +
Sbjct: 309 PTLPRYKEIWDVSIVFNYLK 328


>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 345 KSVYCCKETEHASEFHENNKIFPIVILRYF 434
           +SVYCC+ T H  E    N I  +V L+ F
Sbjct: 46  RSVYCCRSTPHYGETTSLNNILKVVSLQSF 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,953,820
Number of Sequences: 59808
Number of extensions: 303881
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)